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Setting a baseline ...
Setting a baseline for global urban virome surveillance in sewage
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Nieuwenhuijse, David F. (author)
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Oude Munnink, Bas B. (author)
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Phan, My V.T. (author)
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Hendriksen, Rene S. (author)
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Bego, Artan (author)
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Rees, Catherine (author)
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Neilson, Elizabeth Heather (author)
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Coventry, Kris (author)
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Collignon, Peter (author)
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Allerberger, Franz (author)
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Rahube, Teddie O. (author)
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Oliveira, Guilherme (author)
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Ivanov, Ivan (author)
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Sopheak, Thet (author)
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Vuthy, Yith (author)
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Yost, Christopher K. (author)
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Tabo, Djim adjim (author)
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Cuadros-Orellana, Sara (author)
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Ke, Changwen (author)
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Zheng, Huanying (author)
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Baisheng, Li (author)
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Jiao, Xiaoyang (author)
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Donado-Godoy, Pilar (author)
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Coulibaly, Kalpy Julien (author)
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Hrenovic, Jasna (author)
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Jergović, Matijana (author)
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Karpíšková, Renáta (author)
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Elsborg, Bodil (author)
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Legesse, Mengistu (author)
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Eguale, Tadesse (author)
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Heikinheimo, Annamari (author)
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Villacis, Jose Eduardo (author)
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Sanneh, Bakary (author)
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Malania, Lile (author)
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Nitsche, Andreas (author)
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Brinkmann, Annika (author)
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Saba, Courage Kosi Setsoafia (author)
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Kocsis, Bela (author)
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Solymosi, Norbert (author)
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Thorsteinsdottir, Thorunn R. (author)
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Hatha, Abdulla Mohamed (author)
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Alebouyeh, Masoud (author)
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Morris, Dearbhaile (author)
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O’Connor, Louise (author)
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Cormican, Martin (author)
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Moran-Gilad, Jacob (author)
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Battisti, Antonio (author)
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Alba, Patricia (author)
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Shakenova, Zeinegul (author)
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Kiiyukia, Ciira (author)
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Ng’eno, Eric (author)
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Raka, Lul (author)
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Bērziņš, Aivars (author)
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Avsejenko, Jeļena (author)
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Bartkevics, Vadims (author)
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Penny, Christian (author)
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Rajandas, Heraa (author)
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Parimannan, Sivachandran (author)
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Haber, Malcolm Vella (author)
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Pal, Pushkar (author)
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Schmitt, Heike (author)
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van Passel, Mark (author)
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van de Schans, Milou G.M. (author)
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Zuidema, Tina (author)
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Jeunen, Gert Jan (author)
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Gemmell, Neil (author)
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Fashae, Kayode (author)
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Wester, Astrid Louise (author)
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Holmstad, Rune (author)
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Hasan, Rumina (author)
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Shakoor, Sadia (author)
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Rojas, Maria Luz Zamudio (author)
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Wasyl, Dariusz (author)
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Bosevska, Golubinka (author)
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Kochubovski, Mihail (author)
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Radu, Cojocaru (author)
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Gassama†, Amy (author)
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Radosavljevic, Vladimir (author)
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Tay, Moon Y.F. (author)
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Zuniga-Montanez, Rogelio (author)
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Wuertz, Stefan (author)
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- Larsson, D. G. Joakim, 1969 (author)
- Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för infektionssjukdomar,Institute of Biomedicine, Department of Infectious Medicine
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Trkov, Marija (author)
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Keddy, Karen (author)
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Esterhuyse, Kerneels (author)
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Cerdà-Cuéllar, Marta (author)
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Pathirage, Sujatha (author)
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- Larsson, D. G. Joakim, 1969 (author)
- Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för infektionssjukdomar,Institute of Biomedicine, Department of Infectious Medicine
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- Norrgren, Leif (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Inst för biomedicin och veterinär folkhälsovetenskap,Department of Biomedical Science and Veterinary Public Health
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- Örn, Stefan (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Inst för biomedicin och veterinär folkhälsovetenskap,Department of Biomedical Science and Veterinary Public Health
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Van der Heijden, Tanja (author)
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Kumburu, Happiness Houka (author)
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de RodaHusman, Ana Maria (author)
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Njanpop-Lafourcade, Berthe Marie (author)
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Bidjada, Pawou (author)
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Nikiema-Pessinaba, Somtinda Christelle (author)
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Levent, Belkis (author)
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Meschke, John Scott (author)
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Beck, Nicola Koren (author)
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Van Dang, Chinh (author)
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(creator_code:org_t)
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- 2020-08-13
- 2020
- English.
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In: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 10
- Related links:
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https://www.nature.c...
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https://gup.ub.gu.se...
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https://doi.org/10.1...
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https://res.slu.se/i...
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Abstract
Subject headings
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- © 2020, The Author(s). The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective.
Subject headings
- TEKNIK OCH TEKNOLOGIER -- Industriell bioteknik (hsv//swe)
- ENGINEERING AND TECHNOLOGY -- Industrial Biotechnology (hsv//eng)
- NATURVETENSKAP -- Biologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences (hsv//eng)
- MEDICIN OCH HÄLSOVETENSKAP -- Medicinsk bioteknologi (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Medical Biotechnology (hsv//eng)
- MEDICIN OCH HÄLSOVETENSKAP -- Hälsovetenskap -- Folkhälsovetenskap, global hälsa, socialmedicin och epidemiologi (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Health Sciences -- Public Health, Global Health, Social Medicine and Epidemiology (hsv//eng)
Publication and Content Type
- ref (subject category)
- art (subject category)
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- By the author/editor
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Nieuwenhuijse, D ...
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Oude Munnink, Ba ...
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Phan, My V.T.
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Hendriksen, Rene ...
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Bego, Artan
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Rees, Catherine
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show more...
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Neilson, Elizabe ...
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Coventry, Kris
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Collignon, Peter
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Allerberger, Fra ...
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Rahube, Teddie O ...
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Oliveira, Guilhe ...
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Ivanov, Ivan
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Sopheak, Thet
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Vuthy, Yith
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Yost, Christophe ...
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Tabo, Djim adjim
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Cuadros-Orellana ...
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Ke, Changwen
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Zheng, Huanying
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Baisheng, Li
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Jiao, Xiaoyang
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Donado-Godoy, Pi ...
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Coulibaly, Kalpy ...
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Hrenovic, Jasna
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Jergović, Matija ...
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Karpíšková, Rená ...
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Elsborg, Bodil
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Legesse, Mengist ...
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Eguale, Tadesse
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Heikinheimo, Ann ...
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Villacis, Jose E ...
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Sanneh, Bakary
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Malania, Lile
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Nitsche, Andreas
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Brinkmann, Annik ...
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Saba, Courage Ko ...
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Kocsis, Bela
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Solymosi, Norber ...
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Thorsteinsdottir ...
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Hatha, Abdulla M ...
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Alebouyeh, Masou ...
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Morris, Dearbhai ...
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O’Connor, Louise
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Cormican, Martin
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Moran-Gilad, Jac ...
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Battisti, Antoni ...
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Alba, Patricia
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Shakenova, Zeine ...
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Kiiyukia, Ciira
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Ng’eno, Eric
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Raka, Lul
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Bērziņš, Aivars
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Avsejenko, Jeļen ...
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Bartkevics, Vadi ...
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Penny, Christian
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Rajandas, Heraa
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Parimannan, Siva ...
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Haber, Malcolm V ...
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Pal, Pushkar
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Schmitt, Heike
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van Passel, Mark
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van de Schans, M ...
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Zuidema, Tina
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Jeunen, Gert Jan
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Gemmell, Neil
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Fashae, Kayode
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Wester, Astrid L ...
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Holmstad, Rune
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Hasan, Rumina
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Shakoor, Sadia
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Rojas, Maria Luz ...
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Wasyl, Dariusz
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Bosevska, Golubi ...
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Kochubovski, Mih ...
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Radu, Cojocaru
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Gassama†, Amy
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Radosavljevic, V ...
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Tay, Moon Y.F.
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Zuniga-Montanez, ...
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Wuertz, Stefan
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Larsson, D. G. J ...
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Trkov, Marija
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Keddy, Karen
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Esterhuyse, Kern ...
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Cerdà-Cuéllar, M ...
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Pathirage, Sujat ...
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Norrgren, Leif
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Örn, Stefan
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Van der Heijden, ...
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Kumburu, Happine ...
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de RodaHusman, A ...
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Njanpop-Lafourca ...
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Bidjada, Pawou
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Nikiema-Pessinab ...
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Levent, Belkis
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Meschke, John Sc ...
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Beck, Nicola Kor ...
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Van Dang, Chinh
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- About the subject
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- ENGINEERING AND TECHNOLOGY
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ENGINEERING AND ...
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and Industrial Biote ...
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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- MEDICAL AND HEALTH SCIENCES
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MEDICAL AND HEAL ...
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and Medical Biotechn ...
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- MEDICAL AND HEALTH SCIENCES
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MEDICAL AND HEAL ...
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and Health Sciences
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and Public Health Gl ...
- Articles in the publication
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Scientific Repor ...
- By the university
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University of Gothenburg
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Swedish University of Agricultural Sciences