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Deep Learning-Based...
Deep Learning-Based Image Analysis of Liver Steatosis in Mouse Models
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Mairinoja, L. (author)
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Heikela, H. (author)
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Blom, S. (author)
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Kumar, D. (author)
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Knuuttila, A. (author)
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Boyd, S. (author)
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Sjoblom, N. (author)
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Birkman, E. M. (author)
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Rinne, P. (author)
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Ruusuvuori, P. (author)
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Strauss, L. (author)
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- Poutanen, Matti (author)
- Gothenburg University,Göteborgs universitet,Centre for Bone and Arthritis Research,Institutionen för medicin, avdelningen för invärtesmedicin och klinisk nutrition,Institute of Medicine, Department of Internal Medicine and Clinical Nutrition
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(creator_code:org_t)
- 2023
- 2023
- English.
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In: American Journal of Pathology. - 0002-9440. ; 193:8, s. 1072-1080
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Abstract
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- The incidence of nonalcoholic fatty liver disease is a continuously growing health problem worldwide, along with obesity. Therefore, novel methods to both efficiently study the manifestation of nonalco-holic fatty liver disease and to analyze drug efficacy in preclinical models are needed. The present study developed a deep neural network-based model to quantify microvesicular and macrovesicular steatosis in the liver on hematoxylin-eosin-stained whole slide images, using the cloud-based platform, Aiforia Create. The training data included a total of 101 whole slide images from dietary interventions of wild-type mice and from two genetically modified mouse models with steatosis. The algorithm was trained for the following: to detect liver parenchyma, to exclude the blood vessels and any artefacts generated during tissue processing and image acquisition, to recognize and differentiate the areas of micro-vesicular and macrovesicular steatosis, and to quantify the recognized tissue area. The results of the image analysis replicated well the evaluation by expert pathologists and correlated well with the liver fat content measured by EchoMRI ex vivo, and the correlation with total liver triglycerides was notable. In conclusion, the developed deep learning-based model is a novel tool for studying liver steatosis in mouse models on paraffin sections and, thus, can facilitate reliable quantification of the amount of steatosis in large preclinical study cohorts. (Am J Pathol 2023, 193: 1072-1080; https://doi.org/ 10.1016/j.ajpath.2023.04.014)
Subject headings
- MEDICIN OCH HÄLSOVETENSKAP -- Klinisk medicin (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Clinical Medicine (hsv//eng)
Keyword
- disease
- Pathology
Publication and Content Type
- ref (subject category)
- art (subject category)
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- By the author/editor
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Mairinoja, L.
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Heikela, H.
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Blom, S.
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Kumar, D.
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Knuuttila, A.
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Boyd, S.
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show more...
-
Sjoblom, N.
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Birkman, E. M.
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Rinne, P.
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Ruusuvuori, P.
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Strauss, L.
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Poutanen, Matti
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show less...
- About the subject
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- MEDICAL AND HEALTH SCIENCES
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MEDICAL AND HEAL ...
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and Clinical Medicin ...
- Articles in the publication
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American Journal ...
- By the university
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University of Gothenburg