Butler enables rapid cloud-based analysis of thousands of human genomes

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MARC

Yakneen, SEuropean Molecular Biology Laboratory Heidelberg (author)

Butler enables rapid cloud-based analysis of thousands of human genomes

Article/chapterEnglish2020

Publisher, publication year, extent ...

2020-02-05
Springer Science and Business Media LLC,2020

Numbers

LIBRIS-ID:oai:prod.swepub.kib.ki.se:142934233
http://kipublications.ki.se/Default.aspx?queryparsed=id:142934233URI
https://doi.org/10.1038/s41587-019-0360-3DOI
https://lup.lub.lu.se/record/937aa1b1-6488-4110-90c0-09f638a5ec5aURI

Supplementary language notes

Language:English
Summary in:English

Part of subdatabase

SwePubSwePub

Classification

Subject category:ref swepub-contenttype
Subject category:art swepub-publicationtype

Notes

We present Butler, a computational tool that facilitates large-scale genomic analyses on public and academic clouds. Butler includes innovative anomaly detection and self-healing functions that improve the efficiency of data processing and analysis by 43% compared with current approaches. Butler enabled processing of a 725-terabyte cancer genome dataset from the Pan-Cancer Analysis of Whole Genomes (PCAWG) project in a time-efficient and uniform manner.

Subject headings and genre

NATURVETENSKAP Data- och informationsvetenskap Bioinformatik hsv//swe
NATURAL SCIENCES Computer and Information Sciences Bioinformatics hsv//eng
Cloud Computing
Computational Biology/methods
Genome, Human
Humans
Neoplasms/genetics
Software

Added entries (persons, corporate bodies, meetings, titles ...)

Waszak, SMEuropean Molecular Biology Laboratory Heidelberg (author)
Gertz, MHeidelberg University (author)
Korbel, JOEuropean Molecular Biology Laboratory Heidelberg (author)
Aminou, B (author)
Bartolome, J (author)
Boroevich, KA (author)
Boyce, R (author)
Brooks, AN (author)
Buchanan, A (author)
Buchhalter, I (author)
Butler, AP (author)
Byrne, NJ (author)
Cafferkey, A (author)
Campbell, PJ (author)
Chen, ZH (author)
Cho, S (author)
Choi, W (author)
Clapham, P (author)
Davis-Dusenbery, BN (author)
De La Vega, FM (author)
Demeulemeester, J (author)
Dow, MT (author)
Dursi, LJ (author)
Eils, J (author)
Eils, R (author)
Ellrott, K (author)
Farcas, C (author)
Favero, F (author)
Fayzullaev, N (author)
Ferretti, V (author)
Flicek, P (author)
Fonseca, NA (author)
Gelpi, JL (author)
Getz, G (author)
Gibson, B (author)
Grossman, RL (author)
Harismendy, O (author)
Heath, AP (author)
Heinold, MC (author)
Hess, JM (author)
Hofmann, O (author)
Hong, JH (author)
Hudson, TJ (author)
Hutter, B (author)
Hutter, CM (author)
Hubschmann, D (author)
Imoto, S (author)
Ivkovic, S (author)
Jeon, SH (author)
Jiao, W (author)
Jung, J (author)
Kabbe, R (author)
Kahles, A (author)
Kerssemakers, JNA (author)
Kim, HL (author)
Kim, H (author)
Kim, J (author)
Kim, Y (author)
Kleinheinz, K (author)
Koscher, M (author)
Koures, A (author)
Kovacevic, M (author)
Lawerenz, C (author)
Leshchiner, I (author)
Liu, J (author)
Livitz, D (author)
Mihaiescu, GL (author)
Mijalkovic, S (author)
Lazic, AM (author)
Miyano, S (author)
Miyoshi, N (author)
Nahal-Bose, HK (author)
Nakagawa, H (author)
Nastic, M (author)
Staaf, JohanLund University,Lunds universitet,Avdelningen för translationell cancerforskning,Institutionen för laboratoriemedicin,Medicinska fakulteten,Forskningsgrupp Lungcancer,Forskargrupper vid Lunds universitet,LUCC: Lunds universitets cancercentrum,Övriga starka forskningsmiljöer,Bröst/lungcancer,Sektion I,Institutionen för kliniska vetenskaper, Lund,Division of Translational Cancer Research,Department of Laboratory Medicine,Faculty of Medicine,Research Group Lung Cancer,Lund University Research Groups,LUCC: Lund University Cancer Centre,Other Strong Research Environments,Breast/lungcancer,Section I,Department of Clinical Sciences, Lund(Swepub:lu)onk-jst (author)
Nicholson, J (author)
O'Connor, BD (author)
Ocana, D (author)
Ohi, K (author)
Ohno-Machado, L (author)
Omberg, L (author)
Ouellette, BFF (author)
Paramasivam, N (author)
Perry, MD (author)
Pihl, TD (author)
Prinz, M (author)
Puiggros, M (author)
Radovic, P (author)
Raine, KM (author)
Rheinbay, E (author)
Rosenberg, M (author)
Royo, R (author)
Ratsch, G (author)
Saksena, G (author)
Schlesner, M (author)
Shorser, SI (author)
Short, C (author)
Sofia, HJ (author)
Spring, J (author)
Stein, LD (author)
Struck, AJ (author)
Tiao, G (author)
Tijanic, N (author)
Torrents, D (author)
Van Loo, P (author)
Vazquez, M (author)
Vicente, D (author)
Wala, JA (author)
Wang, ZN (author)
Weischenfeldt, J (author)
Werner, J (author)
Williams, A (author)
Woo, Y (author)
Wright, AJ (author)
Xiang, Q (author)
Yang, LM (author)
Yuen, D (author)
Yung, CK (author)
Zhang, JJ (author)
Borg, ÅkeLund University,Lunds universitet,Bröstcancer-genetik,Sektion I,Institutionen för kliniska vetenskaper, Lund,Medicinska fakulteten,Familjär bröstcancer,Forskargrupper vid Lunds universitet,LUCC: Lunds universitets cancercentrum,Övriga starka forskningsmiljöer,Breastcancer-genetics,Section I,Department of Clinical Sciences, Lund,Faculty of Medicine,Familial Breast Cancer,Lund University Research Groups,LUCC: Lund University Cancer Centre,Other Strong Research Environments(Swepub:lu)onk-abo (creator_code:cre_t)
Ringnér, MarkusLund University,Lunds universitet,Molekylär cellbiologi,Biologiska institutionen,Naturvetenskapliga fakulteten,Molecular Cell Biology,Department of Biology,Faculty of Science(Swepub:lu)thep-mri (creator_code:cre_t)
European Molecular Biology Laboratory HeidelbergHeidelberg University (creator_code:org_t)

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In:Nature biotechnology: Springer Science and Business Media LLC38:3, s. 288-+1546-16961087-0156

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By the author/editor: Yakneen, S; Waszak, SM; Gertz, M; Korbel, JO; Aminou, B; Bartolome, J; show more...; Boroevich, KA; Boyce, R; Brooks, AN; Buchanan, A; Buchhalter, I; Butler, AP; Byrne, NJ; Cafferkey, A; Campbell, PJ; Chen, ZH; Cho, S; Choi, W; Clapham, P; Davis-Dusenbery, ...; De La Vega, FM; Demeulemeester, ...; Dow, MT; Dursi, LJ; Eils, J; Eils, R; Ellrott, K; Farcas, C; Favero, F; Fayzullaev, N; Ferretti, V; Flicek, P; Fonseca, NA; Gelpi, JL; Getz, G; Gibson, B; Grossman, RL; Harismendy, O; Heath, AP; Heinold, MC; Hess, JM; Hofmann, O; Hong, JH; Hudson, TJ; Hutter, B; Hutter, CM; Hubschmann, D; Imoto, S; Ivkovic, S; Jeon, SH; Jiao, W; Jung, J; Kabbe, R; Kahles, A; Kerssemakers, JN ...; Kim, HL; Kim, H; Kim, J; Kim, Y; Kleinheinz, K; Koscher, M; Koures, A; Kovacevic, M; Lawerenz, C; Leshchiner, I; Liu, J; Livitz, D; Mihaiescu, GL; Mijalkovic, S; Lazic, AM; Miyano, S; Miyoshi, N; Nahal-Bose, HK; Nakagawa, H; Nastic, M; Staaf, Johan; Nicholson, J; O'Connor, BD; Ocana, D; Ohi, K; Ohno-Machado, L; Omberg, L; Ouellette, BFF; Paramasivam, N; Perry, MD; Pihl, TD; Prinz, M; Puiggros, M; Radovic, P; Raine, KM; Rheinbay, E; Rosenberg, M; Royo, R; Ratsch, G; Saksena, G; Schlesner, M; Shorser, SI; Short, C; Sofia, HJ; Spring, J; Stein, LD; Struck, AJ; Tiao, G; Tijanic, N; Torrents, D; Van Loo, P; Vazquez, M; Vicente, D; Wala, JA; Wang, ZN; Weischenfeldt, J; Werner, J; Williams, A; Woo, Y; Wright, AJ; Xiang, Q; Yang, LM; Yuen, D; Yung, CK; Zhang, JJ; Borg, Åke; Ringnér, Markus; show less...

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NATURAL SCIENCES: NATURAL SCIENCES; and Computer and Inf ...; and Bioinformatics

Articles in the publication: Nature biotechno ...

By the university: Karolinska Institutet; Lund University

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