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| 2. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 3. |
- Ding, Xue Bing, et al.
(författare)
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Impaired meningeal lymphatic drainage in patients with idiopathic Parkinson’s disease
- 2021
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Ingår i: Nature Medicine. - : Springer Science and Business Media LLC. - 1078-8956 .- 1546-170X. ; 27:3, s. 411-418
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Tidskriftsartikel (refereegranskat)abstract
- Animal studies implicate meningeal lymphatic dysfunction in the pathogenesis of neurodegenerative diseases such as Alzheimer’s disease and Parkinson’s disease (PD). However, there is no direct evidence in humans to support this role1–5. In this study, we used dynamic contrast-enhanced magnetic resonance imaging to assess meningeal lymphatic flow in cognitively normal controls and patients with idiopathic PD (iPD) or atypical Parkinsonian (AP) disorders. We found that patients with iPD exhibited significantly reduced flow through the meningeal lymphatic vessels (mLVs) along the superior sagittal sinus and sigmoid sinus, as well as a notable delay in deep cervical lymph node perfusion, compared to patients with AP. There was no significant difference in the size (cross-sectional area) of mLVs in patients with iPD or AP versus controls. In mice injected with α-synuclein (α-syn) preformed fibrils, we showed that the emergence of α-syn pathology was followed by delayed meningeal lymphatic drainage, loss of tight junctions among meningeal lymphatic endothelial cells and increased inflammation of the meninges. Finally, blocking flow through the mLVs in mice treated with α-syn preformed fibrils increased α-syn pathology and exacerbated motor and memory deficits. These results suggest that meningeal lymphatic drainage dysfunction aggravates α-syn pathology and contributes to the progression of PD.
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| 4. |
- Ma, Teng, et al.
(författare)
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Distributed Reconfigurable Intelligent Surfaces Assisted Indoor Positioning
- 2023
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Ingår i: IEEE Transactions on Wireless Communications. - : Institute of Electrical and Electronics Engineers (IEEE). - 1536-1276 .- 1558-2248. ; 22:1, s. 47-58
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Tidskriftsartikel (refereegranskat)abstract
- Recently, communications with the aid of reconfigurable intelligent surface (RIS), which operates with the aim of enhancing the system communication performance, have aroused extensive researches. Furthermore, the use of RIS for positioning has been considered. Therefore, we focus on a practical structure of indoor positioning assisted by distributed RISs through utilizing their ability to manipulate multipath signals, through the developed quasi-static and dynamic modes. Specifically, in the quasi-static mode, for reducing the implementation cost, the reflection coefficients for each RIS are preset and remain constant. In the dynamic mode, the reflection coefficients can be timely updated with a two-step positioning approach toward more accurate positioning performance. Furthermore, the Cramer-Rao lower bound of the developed positioning scheme is quantified through theoretical analysis. Both theoretical analysis and simulation results demonstrate that RIS has the potential to realize accurate positioning even with a single access point, due to its ability to mark the channel and replace traditional active positioning anchors. Meanwhile, we also show that the developed two-step positioning scheme can achieve considerable performance gain in accurate positioning.
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| 5. |
- Ma, Teng, et al.
(författare)
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Integrated Sensing and Communication for Wireless Extended Reality (XR) With Reconfigurable Intelligent Surface
- 2023
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Ingår i: IEEE Journal on Selected Topics in Signal Processing. - : Institute of Electrical and Electronics Engineers (IEEE). - 1932-4553 .- 1941-0484. ; 17:5, s. 980-994
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Tidskriftsartikel (refereegranskat)abstract
- Future wireless networks will witness ubiquitous human-machine interactions, where extended reality (XR) is expected to be a key scenario in next-generation mobile systems. In this article, we examine the integrated sensing and communication (ISAC) framework in XR, where a reconfigurable intelligent surface (RIS) may assist user (UE) positioning and communication. Specifically, a practical positioning algorithm based on multiple signal classification (MUSIC) with the aid of specially designed RIS configurations is conceived. Furthermore, we formulate the joint optimization of the UE beamformer and RIS phase shifter to maximize the channel capacity under Cramer-Rao lower bound (CRLB) constraints, which is solved by alternating optimization with gradient projection and manifold optimization. Finally, we use simulation results to demonstrate the feasibility of the conceived positioning algorithm and corroborate the effectiveness of the proposed optimization approach.
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| 6. |
- Ma, Teng, et al.
(författare)
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Spreading CDMA via RIS : Multipath Separation, Estimation, and Combination
- 2023
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Ingår i: IEEE Internet of Things Journal. - : Institute of Electrical and Electronics Engineers (IEEE). - 2327-4662. ; 10:13, s. 11396-11413
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Tidskriftsartikel (refereegranskat)abstract
- As a revolutionary technology for future wireless communications, reconfigurable intelligent surface (RIS), characterized by an efficient way of manipulating wireless signals, has been widely investigated in recent years toward enhancing signal quality, energy efficiency, throughput, and so on. However, in RIS-assisted Internet of Things (IoT), a new issue as multipath separation emerges, especially, when deploying multiple RISs to assist communication, since the devices may have limited signal processing capabilities. For alleviating this problem, we conceive a novel RIS-enabled code-division multiple access (CDMA) structure, where each RIS holds a specified time-varying coefficient to tag the channel. Moreover, multipath extraction is further considered, including a practical channel estimation approach along with theoretical derivations in terms of Cramér-Rao lower bound, mean-square error, as well as ergodic channel capacity. Simulation results corroborate the feasibility of the conceived RIS-CDMA structure and the effectiveness of the proposed multipath extraction approach.
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| 7. |
- McGinn, Steven, et al.
(författare)
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New Technologies for DNA analysis-A review of the READNA Project.
- 2016
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Ingår i: New Biotechnology. - : Elsevier BV. - 1876-4347 .- 1871-6784.
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Forskningsöversikt (refereegranskat)abstract
- The REvolutionary Approaches and Devices for Nucleic Acid analysis (READNA) project received funding from the European Commission for 4 1/2 years. The objectives of the project revolved around technological developments in nucleic acid analysis. The project partners have discovered, created and developed a huge body of insights into nucleic acid analysis, ranging from improvements and implementation of current technologies to the most promising sequencing technologies that constitute a 3(rd) and 4(th) generation of sequencing methods with nanopores and in situ sequencing, respectively.
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| 8. |
- Song, Jiao-Jiao, et al.
(författare)
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The 4f-Hybridization Strength in CemMnIn3m+2n Heavy-Fermion Compounds Studied by Angle-Resolved Photoemission Spectroscopy
- 2021
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Ingår i: Chinese Physics Letters. - : IOP Publishing. - 0256-307X .- 1741-3540. ; 38:10
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Tidskriftsartikel (refereegranskat)abstract
- We systemically investigate the nature of Ce 4f electrons in structurally layered heavy-fermion compounds CemMnIn3m+2n (with M = Co, Rh, Jr, and Pt, m = 1, 2, n = 0-2), at low temperature using on-resonance angle-resolved photoemission spectroscopy. Three heavy quasiparticle bands f(0), f(7/2)(1) and f(5/2)(1), are observed in all compounds, whereas their intensities and energy locations vary greatly with materials. The strong f(0) states imply that the localized electron behavior dominates the Ce 4f states. The Ce 4f electrons are partially hybridized with the conduction electrons, making them have the dual nature of localization and itinerancy. Our quantitative comparison reveals that the f(5/2)(1)-f (0) intensity ratio is more suitable to reflect the 4f-state hybridization strength.
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| 9. |
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| 10. |
- Wang, Y. J., et al.
(författare)
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Cyclic AMP in oocytes controls meiotic prophase I and primordial folliculogenesis in the perinatal mouse ovary
- 2015
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Ingår i: Development. - : The Company of Biologists. - 0950-1991 .- 1477-9129. ; 142:2, s. 343-351
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Tidskriftsartikel (refereegranskat)abstract
- In mammalian ovaries, a fixed population of primordial follicles forms during the perinatal stage and the oocytes contained within are arrested at the dictyate stage of meiotic prophase I. In the current study, we provide evidence that the level of cyclic AMP ( cAMP) in oocytes regulates oocyte meiotic prophase I and primordial folliculogenesis in the perinatal mouse ovary. Our results show that the early meiotic development of oocytes is closely correlated with increased levels of intra-oocyte cAMP. Inhibiting cAMP synthesis in fetal ovaries delayed oocyte meiotic progression and inhibited the disassembly and degradation of synaptonemal complex protein 1. In addition, inhibiting cAMP synthesis in in vitro cultured fetal ovaries prevented primordial follicle formation. Finally, using an in situ oocyte chromosome analysis approach, we found that the dictyate arrest of oocytes is essential for primordial follicle formation under physiological conditions. Taken together, these results suggest a role for cAMP in early meiotic development and primordial follicle formation in the mouse ovary.
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