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Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia)

Holt, Carson (author)
Dept Human Genet, Vienna, Austria;USTAR Ctr Genet Discovery, Vienna, Austria
Campbell, Michael (author)
Dept Human Genet, Vienna, Austria;Cold Spring Harbor Lab, Div Plant Biol, POB 100, Cold Spring Harbor, NY 11724 USA
Keays, David A. (author)
Res Inst Mol Pathol, Vienna, Austria
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Edelman, Nathaniel (author)
Res Inst Mol Pathol, Vienna, Austria;Harvard Univ, Dept Organism & Evolutionary Biol, Cambridge, MA 02138 USA
Kapusta, Aurelie (author)
Dept Human Genet, Vienna, Austria;USTAR Ctr Genet Discovery, Vienna, Austria
Maclary, Emily (author)
Univ Utah, Dept Biol, 257 S 1400 E, Salt Lake City, UT 84108 USA
Domyan, Eric T. (author)
Univ Utah, Dept Biol, 257 S 1400 E, Salt Lake City, UT 84108 USA;Utah Valley Univ, Dept Biol, Orem, UT USA
Suh, Alexander (author)
Uppsala universitet,Evolutionsbiologi
Warren, Wesley C. (author)
Washington Univ, Genome Inst, St Louis, MO USA
Yandell, Mark (author)
Dept Human Genet, Vienna, Austria;USTAR Ctr Genet Discovery, Vienna, Austria
Gilbert, M. Thomas P. (author)
Univ Copenhagen, Nat Hist Museum Denmark, Copenhagen, Denmark;Norwegian Univ Sci & Technol, Univ Museum, Trondheim, Norway
Shapiro, Michael D. (author)
Univ Utah, Dept Biol, 257 S 1400 E, Salt Lake City, UT 84108 USA
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 (creator_code:org_t)
2018-05-01
2018
English.
In: G3. - : GENETICS SOCIETY AMERICA. - 2160-1836. ; 8:5, s. 1391-1398
  • Journal article (peer-reviewed)
Abstract Subject headings
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  • The domestic rock pigeon (Columba livia) is among the most widely distributed and phenotypically diverse avian species. C. livia is broadly studied in ecology, genetics, physiology, behavior, and evolutionary biology, and has recently emerged as a model for understanding the molecular basis of anatomical diversity, the magnetic sense, and other key aspects of avian biology. Here we report an update to the C. livia genome reference assembly and gene annotation dataset. Greatly increased scaffold lengths in the updated reference assembly, along with an updated annotation set, provide improved tools for evolutionary and functional genetic studies of the pigeon, and for comparative avian genomics in general.

Subject headings

NATURVETENSKAP  -- Biologi -- Genetik (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Genetics (hsv//eng)

Keyword

Columba livia
rock pigeon
HiRise assembly
MAKER annotation
Genome Report

Publication and Content Type

ref (subject category)
art (subject category)

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