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The house spider ge...
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Schwager, Evelyn E.Oxford Brookes Univ, Dept Biol & Med Sci, Gipsy Lane, Oxford OX3 0BP, England.;Univ Massachusetts Lowell, Dept Biol Sci, 198 Riverside St, Lowell, MA 01854 USA.
(författare)
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution
- Artikel/kapitelEngelska2017
Förlag, utgivningsår, omfång ...
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2017-07-31
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BIOMED CENTRAL LTD,2017
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electronicrdacarrier
Nummerbeteckningar
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LIBRIS-ID:oai:DiVA.org:uu-332833
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https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-332833URI
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https://doi.org/10.1186/s12915-017-0399-xDOI
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Språk:engelska
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Sammanfattning på:engelska
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Ämneskategori:ref swepub-contenttype
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Ämneskategori:art swepub-publicationtype
Anmärkningar
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Background: The duplication of genes can occur through various mechanisms and is thought to make a major contribution to the evolutionary diversification of organisms. There is increasing evidence for a large-scale duplication of genes in some chelicerate lineages including two rounds of whole genome duplication (WGD) in horseshoe crabs. To investigate this further, we sequenced and analyzed the genome of the common house spider Parasteatoda tepidariorum.Results: We found pervasive duplication of both coding and non-coding genes in this spider, including two clusters of Hox genes. Analysis of synteny conservation across the P. tepidariorum genome suggests that there has been an ancient WGD in spiders. Comparison with the genomes of other chelicerates, including that of the newly sequenced bark scorpion Centruroides sculpturatus, suggests that this event occurred in the common ancestor of spiders and scorpions, and is probably independent of the WGDs in horseshoe crabs. Furthermore, characterization of the sequence and expression of the Hox paralogs in P. tepidariorum suggests that many have been subject to neo-functionalization and/or sub-functionalization since their duplication.Conclusions: Our results reveal that spiders and scorpions are likely the descendants of a polyploid ancestor that lived more than 450 MYA. Given the extensive morphological diversity and ecological adaptations found among these animals, rivaling those of vertebrates, our study of the ancient WGD event in Arachnopulmonata provides a new comparative platform to explore common and divergent evolutionary outcomes of polyploidization events across eukaryotes.
Ämnesord och genrebeteckningar
Biuppslag (personer, institutioner, konferenser, titlar ...)
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Sharma, Prashant P.Univ Wisconsin Madison, Dept Zool, 430 Lincoln Dr, Madison, WI 53706 USA.
(författare)
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Clarke, ThomasWashington & Lee Univ, Dept Biol, 204 West Washington St, Lexington, VA 24450 USA.;Univ Calif Riverside, Dept Biol, Riverside, CA 92521 USA.;J Craig Venter Inst, 9714 Med Ctr Dr, Rockville, MD 20850 USA.
(författare)
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Leite, Daniel J.Oxford Brookes Univ, Dept Biol & Med Sci, Gipsy Lane, Oxford OX3 0BP, England.
(författare)
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Wierschin, TorstenErnst Moritz Arndt Univ Greifswald, Inst Math & Comp Sci, Walther Rathenau Str 47, D-17487 Greifswald, Germany.
(författare)
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Pechmann, MatthiasUniv Goettingen, Johann Friedrich Blumenbach Inst Zool & Anthropol, Dept Dev Biol, GZMB Ernst Caspari Haus, Justus von Liebig Weg 11, D-37077 Gottingen, Germany.;Univ Cologne, Cologne Bioctr, Inst Zool, Dept Dev Biol, Zuelpicher Str 47b, D-50674 Cologne, Germany.
(författare)
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Akiyama-Oda, YasukoJT Biohist Res Hall, 1-1 Murasaki Cho, Takatsuki, Osaka 5691125, Japan.;Osaka Med Coll, Takatsuki, Osaka, Japan.
(författare)
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Esposito, LaurenCalif Acad Sci, Inst Biodivers Sci & Sustainabil, 55 Mus Concourse Dr, San Francisco, CA 94118 USA.
(författare)
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Bechsgaard, JesperAarhus Univ, Dept Biosci, Ny Munkegade 116,Bldg 1540, DK-8000 Aarhus C, Denmark.
(författare)
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Bilde, TrineAarhus Univ, Dept Biosci, Ny Munkegade 116,Bldg 1540, DK-8000 Aarhus C, Denmark.
(författare)
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Buffry, Alexandra D.Oxford Brookes Univ, Dept Biol & Med Sci, Gipsy Lane, Oxford OX3 0BP, England.
(författare)
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Chao, HsuBaylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Dinh, HuyenBaylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Doddapaneni, HarshaVardhanBaylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Dugan, ShannonBaylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Eibner, CorneliusFriedrich Schiller Univ Jena, Dept Genet, Philosophenweg 12, D-07743 Jena, Germany.
(författare)
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Extavour, Cassandra G.Harvard Univ, Dept Organism & Evolutionary Biol, 16 Divin Ave, Cambridge, MA 02138 USA.
(författare)
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Funch, PeterAarhus Univ, Dept Biosci, Ny Munkegade 116,Bldg 1540, DK-8000 Aarhus C, Denmark.
(författare)
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Garb, JessicaUniv Massachusetts Lowell, Dept Biol Sci, 198 Riverside St, Lowell, MA 01854 USA.
(författare)
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Gonzalez, Luis B.Oxford Brookes Univ, Dept Biol & Med Sci, Gipsy Lane, Oxford OX3 0BP, England.
(författare)
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Gonzalez, Vanessa L.Smithsonian Natl Museum Nat Hist, MRC 163,POB 37012, Washington, DC 20013 USA.
(författare)
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Griffiths-Jones, SamUniv Manchester, Fac Biol Med & Hlth, D1416 Michael Smith Bldg,Oxford Rd, Manchester M13 9PT, Lancs, England.
(författare)
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Han, YiBaylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Hayashi, CherylUniv Calif Riverside, Dept Biol, Riverside, CA 92521 USA.;Amer Museum Nat Hist, Div Invertebrate Zool, New York, NY 10024 USA.
(författare)
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Hilbrant, MaartenOxford Brookes Univ, Dept Biol & Med Sci, Gipsy Lane, Oxford OX3 0BP, England.;Univ Cologne, Cologne Bioctr, Inst Zool, Dept Dev Biol, Zuelpicher Str 47b, D-50674 Cologne, Germany.
(författare)
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Hughes, Daniel S. T.Baylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Janssen, Ralf,1975-Uppsala universitet,Paleobiologi(Swepub:uu)ralja876
(författare)
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Lee, Sandra L.Baylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Maeso, IgnacioUniv Pablo de Olavide, CABD, CSIC, Seville, Spain.
(författare)
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Murali, Shwetha C.Baylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Muzny, Donna M.Baylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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da Fonseca, Rodrigo NunesUniv Fed Rio de Janeiro, Nucleo Ecol & Desenvolvimento SocioAmbiental Maca, Campus Macae, BR-27941222 Rio de Janeiro, Brazil.
(författare)
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Paese, Christian L. B.Oxford Brookes Univ, Dept Biol & Med Sci, Gipsy Lane, Oxford OX3 0BP, England.
(författare)
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Qu, JiaxinBaylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Ronshaugen, MatthewUniv Manchester, Fac Biol Med & Hlth, D1416 Michael Smith Bldg,Oxford Rd, Manchester M13 9PT, Lancs, England.
(författare)
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Schomburg, ChristophUniv Goettingen, Johann Friedrich Blumenbach Inst Zool & Anthropol, Dept Dev Biol, GZMB Ernst Caspari Haus, Justus von Liebig Weg 11, D-37077 Gottingen, Germany.
(författare)
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Schönauer, AnnaOxford Brookes Univ, Dept Biol & Med Sci, Gipsy Lane, Oxford OX3 0BP, England.
(författare)
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Stollewerk, AngelikaQueen Mary Univ London, Sch Biol & Chem Sci, Mile End Rd, London E1 4NS, England.
(författare)
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Torres-Oliva, MontserratUniv Goettingen, Johann Friedrich Blumenbach Inst Zool & Anthropol, Dept Dev Biol, GZMB Ernst Caspari Haus, Justus von Liebig Weg 11, D-37077 Gottingen, Germany.
(författare)
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Turetzek, NataschaUniv Goettingen, Johann Friedrich Blumenbach Inst Zool & Anthropol, Dept Dev Biol, GZMB Ernst Caspari Haus, Justus von Liebig Weg 11, D-37077 Gottingen, Germany.
(författare)
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Vanthournout, BramAarhus Univ, Dept Biosci, Ny Munkegade 116,Bldg 1540, DK-8000 Aarhus C, Denmark.;Univ Ghent, Dept Biol, Evolut & Opt Nanostruct Grp EON, Ghent, Belgium.
(författare)
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Werren, John H.Univ Rochester, Dept Biol, Rochester, NY 14627 USA.
(författare)
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Wolff, CarstenHumboldt Univ, Inst Biol, Philippstr 13, D-10115 Berlin, Germany.
(författare)
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Worley, Kim C.Baylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Bucher, GregorGeorg August Univ, GZMB, Johann Friedrich Blumenbach Inst, Dept Evolutionary Dev Genet, Gottingen Campus,Justus von Liebig Weg 11, D-37077 Gottingen, Germany.
(författare)
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Gibbs, Richard A.Baylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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Coddington, JonathanSmithsonian Natl Museum Nat Hist, MRC 163,POB 37012, Washington, DC 20013 USA.
(författare)
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Oda, HirokiJT Biohist Res Hall, 1-1 Murasaki Cho, Takatsuki, Osaka 5691125, Japan.;Osaka Univ, Grad Sch Sci, Dept Biol Sci, Osaka, Japan.
(författare)
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Stanke, MarioErnst Moritz Arndt Univ Greifswald, Inst Math & Comp Sci, Walther Rathenau Str 47, D-17487 Greifswald, Germany.
(författare)
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Ayoub, Nadia A.Washington & Lee Univ, Dept Biol, 204 West Washington St, Lexington, VA 24450 USA.
(författare)
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Prpic, Nikola-MichaelUniv Goettingen, Johann Friedrich Blumenbach Inst Zool & Anthropol, Dept Dev Biol, GZMB Ernst Caspari Haus, Justus von Liebig Weg 11, D-37077 Gottingen, Germany.
(författare)
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Flot, Jean-FrancoisULB, Evolutionary Biol & Ecol, CP 160-12,Ave FD Roosevelt 50, B-1050 Brussels, Belgium.
(författare)
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Posnien, NicoUniv Goettingen, Johann Friedrich Blumenbach Inst Zool & Anthropol, Dept Dev Biol, GZMB Ernst Caspari Haus, Justus von Liebig Weg 11, D-37077 Gottingen, Germany.
(författare)
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Richards, StephenBaylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, One Baylor Plaza, Houston, TX 77030 USA.
(författare)
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McGregor, Alistair P.Oxford Brookes Univ, Dept Biol & Med Sci, Gipsy Lane, Oxford OX3 0BP, England.
(författare)
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Oxford Brookes Univ, Dept Biol & Med Sci, Gipsy Lane, Oxford OX3 0BP, England.;Univ Massachusetts Lowell, Dept Biol Sci, 198 Riverside St, Lowell, MA 01854 USA.Univ Wisconsin Madison, Dept Zool, 430 Lincoln Dr, Madison, WI 53706 USA.
(creator_code:org_t)
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Ingår i:BMC Biology: BIOMED CENTRAL LTD151741-7007
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- Av författaren/redakt...
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Schwager, Evelyn ...
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Sharma, Prashant ...
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Clarke, Thomas
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Leite, Daniel J.
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Wierschin, Torst ...
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Pechmann, Matthi ...
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visa fler...
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Akiyama-Oda, Yas ...
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Esposito, Lauren
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Bechsgaard, Jesp ...
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Bilde, Trine
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Buffry, Alexandr ...
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Chao, Hsu
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Dinh, Huyen
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Doddapaneni, Har ...
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Dugan, Shannon
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Eibner, Corneliu ...
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Extavour, Cassan ...
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Funch, Peter
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Garb, Jessica
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Gonzalez, Luis B ...
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Gonzalez, Vaness ...
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Griffiths-Jones, ...
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Han, Yi
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Hayashi, Cheryl
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Hilbrant, Maarte ...
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Hughes, Daniel S ...
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Janssen, Ralf, 1 ...
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Lee, Sandra L.
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Maeso, Ignacio
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Murali, Shwetha ...
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Muzny, Donna M.
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da Fonseca, Rodr ...
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Paese, Christian ...
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Qu, Jiaxin
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Ronshaugen, Matt ...
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Schomburg, Chris ...
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Schönauer, Anna
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Stollewerk, Ange ...
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Torres-Oliva, Mo ...
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Turetzek, Natasc ...
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Vanthournout, Br ...
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Werren, John H.
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Wolff, Carsten
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Worley, Kim C.
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Bucher, Gregor
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Gibbs, Richard A ...
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Coddington, Jona ...
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Oda, Hiroki
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Stanke, Mario
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Ayoub, Nadia A.
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Prpic, Nikola-Mi ...
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Flot, Jean-Franc ...
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Posnien, Nico
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Richards, Stephe ...
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McGregor, Alista ...
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