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1.
  • Amer, Abdelhalim, et al. (författare)
  • Scaling FMM with data-driven OpenMP tasks on multicore architectures
  • 2016
  • Ingår i: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). - Cham : Springer International Publishing. - 1611-3349 .- 0302-9743. ; 9903 LNCS, s. 156-170
  • Tidskriftsartikel (refereegranskat)abstract
    • Poor scalability on parallel architectures can be attributed to several factors, among which idle times, data movement, and runtime overhead are predominant. Conventional parallel loops and nested parallelism have proved successful for regular computational patterns. For more complex and irregular cases, however, these methods often perform poorly because they consider only a subset of these costs. Although data-driven methods are gaining popularity for efficiently utilizing computational cores, their data movement and runtime costs can be prohibitive for highly dynamic and irregular algorithms, such as fast multipole methods (FMMs). Furthermore, loop tiling, a technique that promotes data locality and has been successful for regular parallel methods, has received little attention in the context of dynamic and irregular parallelism. We present a method to exploit loop tiling in data-driven parallel methods. Here, we specify a methodology to spawn work units characterized by a high data locality potential. Work units operate on tiled computational patterns and serve as building blocks in an OpenMP task-based data-driven execution. In particular, by the adjusting work unit granularity, idle times and runtime overheads are also taken into account. We apply this method to a popular FMM implementation and show that, with careful tuning, the new method outperforms existing parallel-loop and user-level thread-based implementations by up to fourfold on 48 cores.
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2.
  • Saffar Shamshirgar, Davood, et al. (författare)
  • Regularized FMM for MD simulations
  • Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
    • A regularized fast multipole method (FMM) which approximately conserves the total energy in Molecular dynamics (MD) simulations is presented. The new algorithm introduces a regularization which eliminates the discontinuity inherent in the FMM. This allows us to use FMM in simulations as a substitute for widely used FFT based methods. For a system of N particles, the computational complexity of the resulting method is still of order N though with a larger constant compared to the plain FMM. Numerical examples are provided to confirm that the new algorithm improves the accuracy and approximately conserves the long term total energy.
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