| 1. |
- Aagaard, Sunniva M.D. 1977-, et al.
(författare)
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Resolving maternal relationships in the clubmoss genus Diphasiastrum (Lycopodiaceae)
- 2009
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Ingår i: Taxon. - 0040-0262 .- 1996-8175. ; 58:3, s. 835-848
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Tidskriftsartikel (refereegranskat)abstract
- Diphasiastrum comprises 20-30 species. In addition to a number of species with a circumboreal distribution, several island endemics and putative diploid hybrid species contribute to the diversity of the group. To assess the integrity and relationships of the recognized species, a global phylogeny of Diphasiastrum is constructed using five chloroplast regions comprising ~9000 bp. Six monophyletic groups are identified. Accessions identified as hybrid species cluster in all but one case together with one of its putative parents. Two microsatellite loci are identified, and allelic information combined with sequence information is found diagnostic for the three putative parental taxa in the Central Europe hybrid complexes. Haplotype screening is performed on six Central European populations, from where one or more putative diploid hybrid species have been reported to grow in sympatry with their parent species. The most common parental haplotypes are identified in all populations. Additional intraspecific variation, restricted to single populations, is identified in all sympatric populations at very low frequencies. Taking the low degree of sequence and microsatellite variation into consideration, the acknowledged morphological diversity in Central Europe is probably best explained by phenotypic plasticity, ancestral polymorphisms or relatively recent events of reticulate evolution.
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| 2. |
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| 3. |
- Anderberg, A. A., et al.
(författare)
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Maesaceae, a new primuloid family in the order Ericales s.l.
- 2000
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Ingår i: Taxon. - Vienna, Austria : IAPT. - 0040-0262 .- 1996-8175. ; 49:2, s. 183-187
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Tidskriftsartikel (refereegranskat)abstract
- Evidence from morphology and molecular sequence data from three chloroplast genes, rbcL, ndhF, and atpB, have shown that the genus Maesa constitutes an evolutionary lineage separate from the other three primuloid families, Theophrastaceae, Myrsinaceae, and Primulaceae. The new family Maesaceae is here formally recognised, its taxonomic status being changed from a subfamily of Myrsinaceae. The new family comprises a single genus, Maesa Forssk., with some 100 species of trees or shrubs; it is diagnosed by characters such as flower pedicels with two bracteoles, a semi-inferior ovary, and indehiscent fruits with many seeds. A key to the major groups of primuloid taxa is presented.
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| 4. |
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| 5. |
- Anderson, Heidi, et al.
(författare)
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(087–090) Proposal to treat the use of a hyphen in the name of a fossil-genus as an orthographical error
- 2015
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Ingår i: Taxon. - : International Association for Plant Taxonomy. - 0040-0262 .- 1996-8175.
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Tidskriftsartikel (refereegranskat)abstract
- We propose modifications to the Code such that use of a hyphen in the name of a fossil-genus is treated as an error to be corrected by deletion of the hyphen. This will circumvent the need to conserve the numerous de-hyphenated names against unused hyphenated forms. We propose changes to Art. 60 of the Code to allow this correction, and the addition of a phrase in Art. 20 to add clarity to the naming of fossil-genera.
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| 6. |
- Andersson, Lennart, 1948, et al.
(författare)
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Phylogeny of the tribe Cinchoneae (Rubiaceae), its position in Cinchonoideae, and description of a new genus, Ciliosemina
- 2005
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Ingår i: Taxon. - 0040-0262. ; 54:1, s. 17-28
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Tidskriftsartikel (refereegranskat)abstract
- Relationships of and within the Rubiaceae tribe Cinchoneae were estimated based on DNA sequence variation in five loci: the ITS region, the matK and rbcL genes, the rps16 intron, and the trnL-F region including the trnL intron and the trnL-F intergenic spacer. Within Cinchonoideae s.s., the tribe Naucleeae is the sister group of a clade that comprises all other taxa. Cinchoneae and Isertieae s.s., are strongly supported as sister groups. The tribe Cinchoneae is strongly supported as monophyletic in a restricted sense, including the genera Cinchona, Cinchonopsis, Joosia, Ladenbergia, Remijia and Stilpnophyllum. There is strong support that these genera are monophyletic as presently conceived, except that one species mostly referred to Remijia is of uncertain phylogenetic affinity. To accommodate this species and a morphologically closely similar one, a new genus, Ciliosemina A. Antonelli, is proposed and two new combinations are made.
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| 7. |
- Andersson, Lennart, 1948, et al.
(författare)
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Relationships of the genus Azorella (Apiaceae) and other hydrocotyloids inferred from sequence variation in three plastid markers
- 2006
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Ingår i: Taxon. - 0040-0262. ; 55:2, s. 270-280
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Tidskriftsartikel (refereegranskat)abstract
- Relationships of genera traditionally referred to the subfamily Hydrocotyloideae (Apiaceae), with emphasis on Azorella, were estimated using sequence variation in the markers matK, rbcL, and rps 16. The analyses were based on a combined dataset comprising 66 taxa represented by 134 sequences (29 matK, 40 rbcL, and 65 rps 16) as well as partial datasets constructed from individual markers and combinations of them. The results confirm previous observations that the hydrocotyloids are an unnatural assemblage of taxa from at least four different groups, of which one belongs to Araliaceae and the remaining ones to Apiaceae. The recently recognized subfamilies Mackinlayoideae and Azorelloideae are supported, with the possible exclusion of Platysace from the former and the addition of Asteriscium, Diposis, Domeykoa, Drusa, Homalocarpus, Laretia, Oschatzia, and Pozoa to the latter. Within Azorelloideae, the Azorella, Bowlesia, and Asteriscium clades are identified, although relationships among them are obscure. The genus Azorella occurs in two subclades that also include other genera, and is obviously paraphyletic as presently conceived. The Azorella sections Cirrhosae and Ciliatae are probably also paraphyletic.
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| 8. |
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| 9. |
- Andreasen, Katarina, et al.
(författare)
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Genetic identity of putative Linnaean plants : Successful DNA amplification of Linnaeus's crab apple Malus baccata
- 2014
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Ingår i: Taxon. - : Wiley. - 0040-0262 .- 1996-8175. ; 63:2, s. 408-416
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- Advancements in molecular techniques enable us to extract DNA from historic herbarium specimens and facilitate genetic comparisons between herbarium material and living plant collections. These recent advances offer an exciting opportunity for identifying extant Linnaean plants by genetic comparisons of Linnaeus's own herbarium specimens with potentially remnant plants from his cultivations. DNA from the lectotype of Malus baccata (L.) Borkh. in the Linnaean Herbarium was successfully extracted and amplified for five of twelve loci of microsatellites. Results of genetic comparisons with M. baccata trees from Linnaeus's Hammarby, Sweden, show that the trees at Hammarby are closely related to each other, but not to the lectotype, which is closer to material from Russia. This suggests that Linnaeus received M. baccata from more than one source. Although not close to the lectotype and not represented by a specimen in the Linnaean Herbarium, the extant M. baccata at Hammarby may still represent Linnaean plants, that were grown by Linnaeus himself, or the descendants to such plants. Future studies on the almost 50 living, potential Linnaean plants may reveal an invaluable biological, scientific and cultural heritage from the era that saw the rise of systematic biology.
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| 10. |
- Andreasen, Katarina, et al.
(författare)
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Successful DNA amplification of a more than 200-year-old herbarium specimen : recovering genetic material from the Linnaean era
- 2009
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Ingår i: Taxon. - 0040-0262 .- 1996-8175. ; 58:3, s. 959-962
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Tidskriftsartikel (refereegranskat)abstract
- The limit for successful DNA extraction was tested by amplification and sequencing of an over 200-year-old herbarium specimen collected by Adam Afzelius, a student of Carl Linnaeus. We amplified and sequenced a 800-bp region between 16S ribosomal DNA and the 3′ part of the trnI gene (16S-trnI) in the chloroplast genomeof Phaulopsis talbotii S. Moore (Acanthaceae). To test the replicability and to control for contamination the procedure was performed in sealed vials and with negative PCR controls. The procedure was also repeated in a separate laboratory. In addition, the chloroplast rpl16 intron was successfully amplified and sequenced and the rps16 intron amplified. Sequences of taxa closely related to Acanthaceae were found to be most similar to the produced sequences. The results suggest that molecular investigations of other 18th century botanical collections are feasible and that molecular methods could be employed for comparative studies to extant plant collections. An important application would be to identify descendants or clones of Linnaean lectotypes by comparing DNA from these with potentially remnant plants from Linnaeus’ cultivations.
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| 11. |
- Applequist, Wendy L., et al.
(författare)
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Apportionment of institutional votes for the Nomenclature Section : A rebuttal to Smith & al.
- 2010
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Ingår i: Taxon. - 0040-0262 .- 1996-8175. ; 59:5, s. 1567-1570
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Tidskriftsartikel (refereegranskat)abstract
- Smith & al. (2010) have suggested that the apportionment of institutional votes for the Nomenclature Section of the International Botanical Congress based upon taxonomic activity represents a "colonial legacy" that disadvantages developing nations, and that institutional votes should instead be distributed based at least in part upon a country's human population and the size of its flora. While we agree that increasing participation by developing-country taxonomists is an important goal, we believe that Smith & al. fail to support their claim that the current practice of plant nomenclature is harmful to developing nations. No evidence has been offered of regional biases regarding proposals to change the wording of the Code, which represent the vast majority of the votes taken at any Nomenclature Section, nor has the current process of apportionment of institutional votes been shown to be biased. The reform measures proposed by Smith & al. would, as we show, introduce explicit discrimination based on nationality into the International code of botanical nomenclature, undermining the international cooperation among taxonomists that is necessary for the smooth functioning of a universally accepted system of nomenclature. Rather than making hasty and perhaps harmful changes to the current means of voting, we suggest that the international taxonomic community should consider carefully what measures will best facilitate participation without creating new sources of injustice.
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| 12. |
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| 13. |
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| 14. |
- Backlund, Anders, et al.
(författare)
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Diervillaceae and Linnaeaceae, two new families of caprifolioids
- 1998
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Ingår i: Taxon. - : INT ASSOC PLANT TAXONOMY. - 0040-0262 .- 1996-8175. ; 47:3, s. 657-661
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Tidskriftsartikel (refereegranskat)abstract
- Two new families of caprifolioids, Diervillaceae and Linnaeaceae, are proposed. They correspond to the former subfamilies Diervilloideae and Linnaeoideae. A key to their genera and those remaining in Caprifoliaceae is provided.
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| 15. |
- Backlund, Anders, et al.
(författare)
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Pollen morphology and the systematic position of Triplostegia (Dipsacales)
- 1997
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Ingår i: Taxon. - : INT ASSOC PLANT TAXONOMY. - 0040-0262 .- 1996-8175. ; 46:1, s. 21-31
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Tidskriftsartikel (refereegranskat)abstract
- Triplostegia comprises two species of perennial herbs from southeast Asia, T. glandulifera and T. grandiflora. The systematic position of the genus has been debated ever since it was described, and it has been placed in either Dipsacaceae or Valerianaceae, or in a family of its own Triplo-stegiaceae. Pollen of Triplostegia, investigated by light microscopy and scanning electron micro-scopy, is similar to that of both Dipsacaceae and Valerianaceae. Presence of numerous branched and bent columellae as well as an aperturem argins tructurer esemblingt he halo found in Valeria-naceae indicates a closer relationship to the Valerianaceae. A sister-group relationship between Triplostegia and the Valerianaceae is furthermore supported by other studies of molecular and morphological data. In order to maximize information content in the framework of mandatory classificational ranks, Triplostegia is best included in the family Valerianaceae, as the sole mem-ber of a subfamily Triplostegioideae.
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| 16. |
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| 17. |
- Backlund, Maria, et al.
(författare)
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Paraphyly of Paederieae, recognition of Putorieae and expansion of Plocama (Rubiaceae-Rubioideae)
- 2007
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Ingår i: Taxon. - 0040-0262 .- 1996-8175. ; 56:2, s. 315-328
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Tidskriftsartikel (refereegranskat)abstract
- Phylogenetic analyses of taxa that have been included in the tribe Paederieae are performed on the basis of a molecular dataset of plastid DNA sequences (the rbcL gene, rps16 intron, and the regions trnT-F). The paraphyly of Paederieae as currently circumscribed is confirmed. A clade comprising Paederia, Spermadictyon, Leptodermis, and Serissa is retrieved and the circumscription of Paederieae is proposed to be restricted to this clade. Paederia is sister to a clade with Spermadictyon, Leptodermis, and Serissa. Paederia is subdivided into an Asian and an African clade, and within the African clade seven species endemic to Madagascar are sister to P. pospischilii in north-eastern Africa. The position of Kelloggia as sister to Rubieae is confirmed and a position of Saprosma in the Spermacoceae alliance is supported. The genera Putoria, Gaillonia (with segregates), Plocama, and Aitchisonia form a clade that is sister to Theligoneae/Kelloggia/Rubieae. The name Putorieae is resurrected for the members of this clade. A synopsis of Putorieae is provided, where all species are placed in an expanded Plocama with 34 species. Thirty-one new combinations in Plocama are proposed. Plocama pendula on the Canary Islands is strongly supported as sister to a clade with P. crocyllis (former Crocyllis) in southern Africa and P. yemenensis and P. tinctoria (former Gaillonia) in southern Arabia/Horn of Africa.
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| 18. |
- Backlund, Maria, et al.
(författare)
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Revision of the Mediterranean species of Plocama (Rubiaceae)
- 2007
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Ingår i: Taxon. - 0040-0262 .- 1996-8175. ; 56:2, s. 516-520
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Tidskriftsartikel (refereegranskat)abstract
- The Mediterranean species of Plocama (incl. Putoria) are revised and two species, the widespread P. calabrica, comb. nov., and P. brevifolia, comb. nov., in Morocco and Algeria, are recognized. The variation and circumscription of the species are discussed and distribution maps are provided. Several names are reduced to synonymy and seven lectotypes are designated.
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| 19. |
- Bengtson, Annika, et al.
(författare)
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Phylogeny of Anisopappus with species circumscriptions revisited (Asteraceae: Athroismeae)
- 2021
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Ingår i: Taxon. - : Wiley. - 0040-0262 .- 1996-8175. ; 70:2, s. 351-364
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Tidskriftsartikel (refereegranskat)abstract
- Anisopappus (Asteraceae: Athroismeae) is a genus with its main distribution in Africa (one species also in Asia), currently considered to include around 21 species. A molecular phylogenetic study of Anisopappus is presented for the first time, based on plastid (ndhF, trnL-trnF, trnQ-rps16) and nuclear (ETS, ITS) data. Anisopappus is confirmed to be monophyletic, and species interrelationships are resolved. The results differ from earlier treatments based on morphology, and the phylogenetic analyses reveal a need for changes in species circumscriptions as compared to those of the most recent treatment. Consequently, many taxa currently treated as synonyms are here shown to represent separate species indicating that the genus includes well over 40 species. Distribution patterns now emerge where several clades are found to consist of species restricted to a particular geographical region. The Anisopappus of Madagascar, many of which were earlier placed in synonymy with species found on the African continent, are here shown to be endemic, and the results reveal a need for further studies of that group.
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| 20. |
- Bengtson, Annika, 1982-, et al.
(författare)
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Phylogeny of the Athroismeae (Asteraceae), with a new circumscription of the tribe
- 2017
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Ingår i: Taxon. - : Wiley. - 0040-0262 .- 1996-8175. ; 66:2, s. 408-420
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Tidskriftsartikel (refereegranskat)abstract
- Athroismeae is a small tribe of the Asteraceae-Asteroideae, the members of which show considerable variation in morphology. A molecular phylogenetic study of the tribe is presented for the first time, based on plastid (ndhF, trnH-psbA, trnL-trnF) and nuclear data (ETS, ITS). The phylogenetic relationships between the different genera within Athroismeae are discussed, and in addition, three unispecific genera: Anisochaeta, Artemisiopsis and Symphyllocarpus as well as Duhaldea (Inula) stuhlmannii, all earlier placed in other tribes, are here shown to belong within Athroismeae. Symphyllocarpus is sister to Centipeda and the earlier Symphyllocarpinae includes Centipedinae in synonymy. Furthermore, Cardosoa and Philyrophyllum are found to be integrated within Anisopappus and their generic status cannot be maintained. An outline of an amended circumscription of the Athroismeae is presented, with three new combinations and a description of the new subtribe Lowryanthinae.
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| 21. |
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| 22. |
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| 23. |
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| 24. |
- Bolmgren, Kjell, et al.
(författare)
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Generic limits in Rhamnus s.l. L. (Rhamnaceae) inferred from nuclear and chloroplast DNA sequence phylogenies.
- 2004
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Ingår i: Taxon. - : International Association for Plant Taxonomy. - 0040-0262 .- 1996-8175. ; 53:2, s. 383-390
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Tidskriftsartikel (refereegranskat)abstract
- This study tested the monophyly of the previously proposed genera Alaternus, Frangula, Oreoherzogia, and Rhamnus s.str., and the phylogenetic relations suggested by Grubov (1949), within the Rhamnus s.l. clade.Based on a global sample of 22 species, we derived phylogenetic hypotheses using parsimony analysis of variation in trnL-F (chloroplast) and ITS (nuclear) DNA regions. Both Alaternus, Frangula, and Oreoherzogia gained strong support, and our results further support recognition of Frangula as a monophyletic genus. The resolution between Alaternus, Oreoherzogia, and the rest of Rhamnus s.str. was less clear, and the mainly Mediterranean Oreoherzogia was strongly grouped with the American R. crocea. Therefore, we consider it as unjustified to split the rest of Rhamnus into smaller genera. Regarding Grubov's phylogenetic hypothesis, our study could only support the dichotomy between Frangula and the rest of Rhamnus.
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| 25. |
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| 26. |
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| 27. |
- Crespo, Ana, et al.
(författare)
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Phylogenetic generic classification of parmelioid lichens (Parmeliaceae,Ascomycota) based on molecular, morphological and chemical evidence.
- 2010
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Ingår i: Taxon. - : John Wiley & Sons. - 0040-0262 .- 1996-8175. ; 59:6, s. 1735-1753
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Tidskriftsartikel (refereegranskat)abstract
- Parmelioid lichens are a diverse and ubiquitous group of foliose lichens. Generic delimitation in parmelioid lichens has been in a state of flux since the late 1960s with the segregation of the large, heterogeneous genus Parmelia into numerous smaller genera. Recent molecular phylogenetic studies have demonstrated that some of these new genera were monophyletic, some were not, and others, previously believed to be unrelated, fell within single monophyletic groups, indicating the need for a revision of the generic delimitations. This study aims to give an overview of current knowledge of the major clades of all parmelioid lichens. For this, we assembled a dataset of 762 specimens, including 31 of 33 currently accepted parmelioid genera (and 63 of 84 accepted genera of Parmeliaceae). We performed maximum likelihood and Bayesian analyses of combined datasets including two, three and four loci. Based on these phylogenies and the correlation of morphological and chemical characters that characterize monophyletic groups, we accept 27 genera within nine main clades. We re-circumscribe several genera and reduce Parmelaria to synonymy with Parmotrema. Emodomelanelia Divakar & A. Crespo is described as a new genus (type: E. masonii). Nipponoparmelia (Kurok.) K.H. Moon, Y. Ohmura & Kashiw. ex A. Crespo & al. is elevated to generic rank and 15 new combinations are proposed (in the genera Flavoparmelia, Parmotrema, Myelochroa, Melanelixia and Nipponoparmelia). A short discussion of the accepted genera is provided and remaining challenges and areas requiring additional taxon sampling are identified.
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| 28. |
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| 29. |
- Danihelka, Jiri, et al.
(författare)
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Viola montana and V. persicifolia (Violaceae): Two names to be rejected
- 2010
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Ingår i: Taxon. - 0040-0262. ; 59:6, s. 1869-1878
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Tidskriftsartikel (refereegranskat)abstract
- The taxonomic and nomenclatural histories of Viola elatior Fr. (1828), V. pumila Chaix (1785) and V. stagnina Kit. ex Schult. (1814) in central and western Europe are discussed. The names V. stagnina and V elatior are lectotypified with specimens corresponding to the current use of these names. The neglected lectotypification in 1988 of V. montana L. (1753) with a specimen referable to V elatior is briefly reviewed. The name V persicifolia Schreb. (1771), used in some floras instead of V. stagnina, is analysed in detail, and we conclude that this name should be interpreted as referring also to V. elatior. In addition the types of V. hornemanniana Schult. (1819) and V. stipulacea Hartm. (1820) are conspecific with V. elatior. The use of V. persicifolia and V montana, representing earlier legitimate names for the species widely known as V elatior, has been notoriously confused for two centuries, and we herein recommend these two names for rejection in order to assure nomenclatural clarity and stability. For similar reasons, we recommend conservation of V. elatior against V. hornemanniana and V. stipulacea.
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| 30. |
- De Block, Petra, et al.
(författare)
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Molecular phylogenetics and generic assessment in the tribe Pavetteae (Rubiaceae)
- 2015
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Ingår i: Taxon. - : Wiley. - 0040-0262 .- 1996-8175. ; 64:1, s. 79-95
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Tidskriftsartikel (refereegranskat)abstract
- This is the first phylogenetic study focused on the Pavetteae, one of the most species-rich and morphologically diverse tribes within the coffee family (Rubiaceae). Fifteen of the 17 currently recognized genera, represented by 85 taxa, were sequenced for rps16, trnT-F and ITS and analysed using Bayesian inference and maximum likelihood methods. The monophyly of the Pavetteae is confirmed. Four major lineages are identified, but their phylogenetic relationships are not fully resolved. The continental African genera Rutidea, Nichallea and Tennantia, the Madagascan genera Homollea and Robbrechtia, and the paleotropical genus Pavetta are monophyletic. Other genera are paraphyletic in their current circumscriptions and the following changes are made: Homolliella is placed in synonymy with Paracephaelis, and Coleactina and Dictyandra with Leptactina, resulting in four new combinations. The large paleotropical genus Tarenna is shown not to be monophyletic. In the future, the name Tarenna should not be used for continental African species. Most of these could be transferred to the hitherto monospecific genus Cladoceras, but other species might constitute altogether new genera. The relationship between the monophyletic Asian-Pacific and Madagascan Tarenna species remains unclear. The phylogeny of the Madagascan genera of the Pavetteae is largely unresolved and the largest Madagascar-centred genus Coptosperma was not recovered as monophyletic. The low resolution for the Madagascan taxa can be considered as an indication of rapid radiation. Further molecular and morphological studies are necessary to clarify the phylogeny of the Pavetteae, especially regarding the African Tarenna species and the Madagascan genera of the tribe.
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| 31. |
- de Boer, Hugo, 1978-, et al.
(författare)
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Convergent morphology in Alpinieae (Zingiberaceae) : Recircumscribing Amomum as a monophyletic genus
- 2018
-
Ingår i: Taxon. - : Wiley. - 0040-0262 .- 1996-8175. ; 67:1, s. 6-36
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Tidskriftsartikel (refereegranskat)abstract
- The tropical ginger genus Amomum (Zingiberaceae) has always posed challenges for classification based on morphological characters. Previous molecular phylogenetic studies showed Amomum to be paraphyletic but limited sampling and absence of the data of the type Amomum subulatum made it impossible to resolve the paraphyly and make nomenclatural changes. Here, Amomum is further investigated in a multi-marker phylogenetic framework using matK and nrITS including multiple accessions of the type, the genus Elettaria and additional accessions of Amomum, Alpinia, Elettariopsis, Geocharis, Geostachys and Hornstedtia. Amomum is shown to consist of nine clades and Alpinia of six. The genera Elettaria, Elettariopsis, Plagiostachys, and species in Hornstedtia are nested within these clades. Morphological studies of species previously subsumed in Amomum support recognition of new genera that correspond to well-delimited clades in the phylogenetic framework presented here. Recircumscription of the paraphyletic genus Amomum facilitates identification and creates nomenclatural stability. Three genera, Conamomum, Meistera and Wurfbainia, are resurrected, and three new genera Epiamomum, Lanxangia and Sundamomum are described, together with a key to the genera and a nomenclatural synopsis placing 384 specific names (incl. all synonyms) into the new generic framework. Of these 129 represent new combinations and 3 are replacement names. Types of Geocharis and Geostachys are designated. Further studies and specific sampling will be needed to resolve other branches of Alpinioideae containing other polyphyletic genera.
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| 32. |
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| 33. |
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| 34. |
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| 35. |
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| 36. |
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| 37. |
- Elbrächter, Malte, et al.
(författare)
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Establishing an Agenda for Calcareous Dinoflagellate Research (Thoracosphaeraceae, Dinophyceae) including a nomenclatural synopsis of generic names
- 2008
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Ingår i: Taxon. - 0040-0262 .- 1996-8175. ; 57:4, s. 1289-1303
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Tidskriftsartikel (refereegranskat)abstract
- Calcareous dinoflagellates are considered to be a monophyletic group of peridinoid taxa that have the potential to produce calcified exoskeletal structures during the life cycle, or that derive from such forms. Frequently, these calcareous bodies are excellently preserved in the fossil record and have received increased attention during the past three decades with regard to their use in biostratigraphy, climate and environmental reconstruction. Fossil and extant taxa have been classified in various, partly concurring, systematic concepts, using character complexes of the theca, cyst wall ultrastructure and archaeopyle/operculum morphology. The significance of such character complexes is briefly discussed in the light of molecular data that have been accumulated during the past decade. Over the years, the number of published taxonomic names has increased, partly due to nomenclatural changes. We propose that the entirety of calcareous dinoflagellates, and non-calcareous relatives derived from them, is accommodated in a single family of the order Peridiniales, the Thoracosphaeraceae, combining the former segregated taxonomic units Calciodinelloideae, a subfamily within Peridiniaceae, and Thoracosphaerales, a separate dinoflagellate order. As a result of a meeting of calcareous dinoflagellate specialists, we outline major subjects that are in need of re-investigation and -evaluation (an Agenda for Calcareous Dinoflagellate Research). In order to contribute to a consistent and stable nomenclature and taxonomy of calcareous dinoflagellates, we list 97 published generic names assigned to known calcareous dinoflagellates in a nomenclatural synopsis, with species names indicating their types and information on type locality and stratigraphy. We evaluate the status of these names—whether validly published and, if so, whether legitimate—,a crucial first step for any revisionary work in the future.
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| 38. |
- Eliasson, Uno
(författare)
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GUNNAR HARLING (1920-2010)
- 2010
-
Ingår i: TAXON. - 0040-0262. ; 59:5, s. 1619-1619
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)
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| 39. |
- Ferm, Julia, et al.
(författare)
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Phylogeny of the Neotropical legume genera Zygia and Marmaroxylon and close relatives
- 2019
-
Ingår i: Taxon. - : International Association for Plant Taxonomy. - 0040-0262 .- 1996-8175. ; 68:4, s. 661-672
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Tidskriftsartikel (refereegranskat)abstract
- The Neotropical legume genera Zygia and Marmaroxylon have traditionally been considered closely related and are sometimes treated as congeners. They have been referred to the mimosoid tribe Ingeae based on their possession of flowers with basally fused stamen filaments. However, their systematic status and position have not been analysed in a phylogenetic context. This study provides the first molecular phylogeny of Zygia and Marmaroxylon and closely related mimosoid legume genera, particularly from the tribe Ingeae. DNA sequence data were derived from the nuclear external transcribed spacer (ETS) and the internal transcribed spacer (ITS), and from the chloroplast psbA-trnH and trnL-trnF regions, and were analysed using Bayesian inference. In all, 29 species of Zygia and 7 species of Marmaroxylon were included in the study along with representative species from the closely related genera Abarema, Acacia s.str., Archidendropsis, Calliandra, Chloroleucon, Cojoba, Faidherbia, Havardia, Hydrochorea, Inga, Leucochloron, Macrosamanea, Pithecellobium, Pseudosamanea, Samanea, Senegalia, Vachellia and Zapoteca. The results show that neither Zygia nor Marmaroxylon are monophyletic as presently circumscribed. Furthermore, these two genera are not monophyletic together. None of the nine presently recognized sections of Zygia that contain more than one species are shown to be monophyletic. Two of the monospecific sections of Zygia, sect. Ingopsis (Z. inundata) and sect. Pseudocojoba (Z. sabatieri), were found in a clade together with species of Inga. Marmaroxylon ocumarense and M. magdalenae, previously treated as synonyms (as Zygia), are not conspecific, and are found in a clade with Macrosamanea and in a clade with species of Abarema and Hydrochorea, respectively. Our results also show the Inga alliance to be non-monophyletic. In correspondence with the results presented, all species referred to Marmaroxylon, except for M. ocumarense and M. magdalenae, are here included in Zygia, and Z. inundata is treated in Inga, in which genus it was first described.
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| 40. |
- Frajman, Božo, et al.
(författare)
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Phylogenetic relationships of Atocion and Viscaria (Sileneae, Caryophyllaceae) inferred from chloroplast, nuclear ribosomal, and low-copy gene DNA sequences
- 2009
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Ingår i: Taxon. - 0040-0262 .- 1996-8175. ; 58:3, s. 811-824
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Tidskriftsartikel (refereegranskat)abstract
- Atocion and Viscaria are two of seven small genera recognised in the tribe Sileneae on the basis of molecular phylogenies. The aim of the present study is to infer phylogenetic relationships among their subordinate taxa, using chloroplast (rps16 intron,psbE-petG spacer region) and nuclear (ITS and the RNA polymerase gene family) DNA sequences. Relative dating was used to discriminate among intralineage and interlineage processes that cause incongruence among different gene-tree topologies. Atocion asterias is demonstrated to belong to Viscaria, which contains three species: V vulgaris (incl. V atropurpurea), V alpina, and V asterias. Infraspecific differentiation of V alpina is not supported by the sequence data. The traditional sectional delimitation of Atocion taxa within Silene is not supported phylogenetically, and Silene tatarinowii as well as S. hoefftiana do not belong to Atocion, as classified previously. Atocion contains six species: A. armeria, A. compactum, A. lerchenfeldianum, A. reuterianum, A. rupestre, and A. scythicinum (not included in our study). With this circumscription, Atocion and Viscaria, respectively, form monophyletic groups in the cpDNA, ITS, RPD2a and RPD2b trees, but not in the RPA2 tree, where such relationships were possibly distorted by ancient hybridisation. Hybridisation with subsequent chloroplast capture is likely to have taken place in the evolutionary history of A. compactum. Three novel nomenclatural combinations are made: Atocion reuterianum, A. scythicinum and Viscaria asterias.
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| 41. |
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| 42. |
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| 44. |
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| 45. |
- Frisch, Andreas, et al.
(författare)
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The Arthonialean challenge: Restructuring Arthoniaceae
- 2014
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Ingår i: Taxon. - : Wiley. - 0040-0262 .- 1996-8175. ; 63, s. 727-744
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Tidskriftsartikel (refereegranskat)abstract
- The Arthoniales is the second-largest group of lichen-forming fungi. A new phylogeny of Arthoniales based on mtSSU, nLSU and RPB2 sequence data is presented, with a focus on crustose representatives. A total of 145 taxa are analyzed including 64 species of Arthoniaceae. We obtained 198 new sequences for 83 specimens representing 71 taxa of Arthoniales. Arthoniaceae is recovered as polyphyletic, demonstrating that previous classifications do not reflect evolutionary patterns. Three phylogenetic lineages are identified: the Arthoniaceae clade, the Bryostigma clade and the Felipes clade. The Bryostigma clade is related to Arthoniaceae, while the Felipes clade shows close affinities to Chrysotrichaceae. Cryptotheciaceae is included as a paraphyletic grouping in Arthoniaceae. Lecanographaceae and the genera Felipes and Melarthonis are described. Bryostigma and Pachnolepia are reinstated for former Arthonia species, and Myriostigma for the Cryptothecia candida complex. Fouragea is reinstated for foliicolous Opegrapha species. Arthonia eos is described and the new combination Alyxoria mougeotii is made. A lectotype is selected for Spiloma fallax. Melaspilea granitophila belongs in Arthoniaceae and Arthonia mediella in Chrysotrichaceae. According to the phylogenetic hypothesis, lichen secondary chemistry, such as pulvinic acid derivates or red pigments, does not characterize monophyletic groups above the genus level. The parasitic life style in Arthoniaceae has evolved more than once. Parasitic species are found in four lineages of the Arthoniaceae clade and in the Bryostigma clade. Arthoniomycetes with chlorococcoid photobionts are restricted to the Bryostigma clade and Chrysotrichaceae, while the only saprophytic Arthonia species in the phylogeny are related to Arthonia radiata and group with lichenized taxa. The phylogenetic data provide a coherent framework for delineating further monophyletic groups in Arthoniaceae in the future.
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| 46. |
- Gautier, Laurent, et al.
(författare)
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A new species, genus and tribe of Sapotaceae, endemic to Madagascar
- 2013
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Ingår i: Taxon. - 0040-0262 .- 1996-8175. ; 62, s. 972-983
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Tidskriftsartikel (refereegranskat)abstract
- Phylogenetic relationships of the two Malagasy Sapotaceae endemic genera Capurodendron and Tsebona have been unclear until now. Recent collections from Madagascar, as well as a better representation of the tribe Isonandreae, altogether 95 terminals, were used to estimate a phylogeny of subfamily Sapotoideae. We analysed sequences of nrDNA (ITS) and cpDNA (trnH-psbA) with Bayesian inference and parsimony jackknifing. As in previous analyses, Sapoteae and Sideroxyleae are recovered monophyletic. In addition, Isonandreae, distributed in the Indo-Pacific, is for the first time resolved as monophy- letic and sister to Sapoteae. All Malagasy accessions of Capurodendron, Tsebona, and a new species are grouped in another well-supported clade. This clade is accommodated in a new tribe Tseboneae characterized by caducous stipules, 5-merous flowers with quincuncial sepals, contorted aestivation of corolla lobes, absence of corolla appendages, one or three stamens opposite each corolla lobe, villous staminodes, seeds with an adaxial scar and plano-convex cotyledons, lacking endosperm. The new species is described in the new genus Bemangidia (B. lowryi) because it has a unique leaf venation for the tribe and combines different morphological features from Capurodendron and Tsebona. All three genera are well-supported monophy- letic groups. Bemangidia lowryi is threatened with extinction due to extensive ongoing forest destruction and is assigned a preliminary conservation status of Critically Endangered.
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| 47. |
- Ghobad-Nejhad, Masoomeh, et al.
(författare)
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Phylogeny and taxonomy of the genus Vuilleminia (Basidiomycota) based on molecular and morphological evidence, with new insights into Corticiales
- 2010
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Ingår i: TAXON. - 0040-0262. ; 59:5, s. 1519-1534
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Tidskriftsartikel (refereegranskat)abstract
- Vuilleminia is a corticioid genus common in Europe whose species inhabit decaying and dead attached wood of angiosperms. To examine the circumscription of the genus and the phylogenetic relationships among its species, we analyzed nuclear ribosomal sequence data from the ITS region and the LSU gene with maximum parsimony and Bayesian methods and also studied morphological characters. Our results challenge the notion that spore size and host specificity are critically important factors in delimiting species of Vuilleminia. A taxonomic summary of the accepted species in Vuilleminia is provided. Vuilleminia species described from the South America and Africa are demonstrated to be distinct from those of the north temperate region. Australovuilleminia coccinea gen. & sp. nov. is proposed for the taxon previously reported as V. comedens from New Zealand. Punctulariopsis gen. nov. is proposed for V. subglobispora described from Argentina (= Punctulariopsis subglobispora) and V. obducens from Ethiopia (= Punctulariopsis obducens). Vuilleminia is shown to be a monophyletic genus, apparently north hemispheric, and currently comprises six species. Vuilleminia together with the closely related genera Cytidia and Australovuilleminia form a well-supported clade (Vuilleminia clade) and the family name Vuilleminiaceae is resurrected to recognize this clade. Vuilleminia quercina (= Corticium quercicola) is not closely related to the other Vuilleminia species and is instead nested in a completely different clade (Corticium clade). A new genus Marchandiopsis is erected for this taxon.
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| 48. |
- Ghorbani, Abdolbaset, et al.
(författare)
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Botanical and floristic composition of the Historical Herbarium of Leonhard Rauwolf collected in the Near East (1573-1575)
- 2018
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Ingår i: Taxon. - : INT ASSOC PLANT TAXONOMY-IAPT. - 0040-0262 .- 1996-8175. ; 67:3, s. 565-580
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Tidskriftsartikel (refereegranskat)abstract
- The German doctor and botanist Leonhard Rauwolf (1535-1596) was the first post-medieval European to travel to the Levant and Mesopotamia. The travel account that he published on his hazardous journey (1573-1575) is well studied, but the plants he collected during his travels have hardly been subjected to scientific study. The fourth volume of Rauwolf's 16th century book herbarium includes plant specimens collected from the area encompassing modern-day Lebanon, Syria and Iraq. We digitized this valuable historic collection, identified all specimens in the herbarium, analyzed its floristic composition, transcribed and translated the Latin and German texts accompanying each specimen and updated the names with the latest accepted nomenclature. The herbarium book includes 191 specimens representing 183 species belonging to 64 families. It includes original specimens of Linnaean type illustrations as well as historical crop cultivars from the Near East. The Rauwolf Herbarium gives a unique insight in the exotic, unknown and useful species of the Near East from the perspective of a 16th century European botanist.
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| 49. |
- Ghorbani, Abdolbaset, et al.
(författare)
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The typification of two Linnaean plant names based on illustrations published by Leonhard Rauwolf in 1583
- 2017
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Ingår i: Taxon. - : Wiley. - 0040-0262 .- 1996-8175. ; 66:5, s. 1204-1207
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Tidskriftsartikel (refereegranskat)abstract
- Based on an assessment of the illustrations published in the travel account of Leonhard Rauwolf and the corresponding specimens collected by him between 1573 and 1575 in the Near East, lectotypes are designated for the Linnaean names Aristolochia maurorum and Rheum ribes, which have not been typified previously.
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| 50. |
- Ginter, Anna, et al.
(författare)
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Phylogenetic affinities of Myrioneuron and Cyanoneuron, generic limits of the tribe Argostemmateae and description of a new Asian tribe, Cyanoneuroneae (Rubiaceae)
- 2015
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Ingår i: Taxon. - : Wiley. - 0040-0262 .- 1996-8175. ; 64:2, s. 286-298
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Tidskriftsartikel (refereegranskat)abstract
- Argostemmateae (Rubiaceae, subfam. Rubioideae) are a mostly tropical Asian group of about 200 species currently classified in four morphologically distinct genera (Argostemma, Mouretia, Mycetia, Neohymenopogon). The monophyly of the tribe and Mycetia is strongly supported by molecular data, however, the tropical Asian genus Myrioneuron, traditionally associated with Mycetia based on its berry fruits, has not previously been investigated. The Bornean and Sulawesian genus Cyanoneuron, described based on the species of Myrioneuron with drupaceous fruits, had not been sequenced. Therefore, the phylogenetic positions of Cyanoneuron and Myrioneuron within Rubiaceae and their generic status have yet to be assessed with molecular data. These genera have tentatively been placed in tribe Spermacoceae (Rubioideae). We reconstructed a robust phylogeny of Rubioideae with sequence data from five plastid regions of 176 accessions and using the Bayesian Markov chain Monte Carlo and parsimony methods. Once the positions of Cyanoneuron and Myrioneuron were revealed, a robust phylogeny of the Spermacoceae alliance was reconstructed with the combined plastid and nuclear data (nrETS, nrITS) from 61 accessions to reassess its tribal limits. Mycetia and Myrioneuron are non-monophyletic and intermixed, and formed a well-supported clade diagnosed by berry fruits. We formally transfer Myrioneuron to Mycetia (older name), and present nine new combinations in the latter genus. Cyanoneuron was resolved with high support as monophyletic, and appears to be closely related to the Chinese monogeneric tribes Foonchewieae and Dunnieae. A new tribe Cyanoneuroneae is described to accommodate Cyanoneuron. This tribe is morphologically distinct from related tribes by its stipules apically divided into multiple linear segments, condensed-cymose inflorescences and drupe-like fruits with numerous small seeds. A new key to the genera of Argostemmateae is provided.
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