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- Wu, X. C., et al.
(författare)
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CPSDv0: a forest stand structure database for plantation forests in China
- 2023
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Ingår i: Big Earth Data. - : Informa UK Limited. - 2096-4471 .- 2574-5417. ; 7:1, s. 212-230
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Tidskriftsartikel (refereegranskat)abstract
- Forest stand structure is not only a crucial factor for regulating forest functioning but also an important indicator for sustainable forest management and ecosystem services. Although there exists a few national/global structure databases for natural forests, a country-wide synthetic structure database for plantation forests over China, the world's largest player in plantation forests, has not been achieved. In this study, we built a country-wide synthetic stand structure database by surveying more than 600 peer-reviewed literature. The database covers tree species, mean stand age, mean tree height, stand density, canopy coverage, diameter at breast height, as well as the associated ancillary in-situ topographical and soil properties. A total of 594 published studies concerning diverse forest stand structure parameters were compiled for 46 tree species. This first synthesis for stand structure of plantation forests over China supports studies on the evolution/ health of plantation forests in response to rapid climate change and intensified disturbances, and benefits country-wide sustainable forest management, future afforestation or reforestation planning. Potential users include those studying forest community dynamics, regional tree growth, ecosystem stability, and health, as well as those working with conservation and sustainable management.
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| 2. |
- Zhang, X. L., et al.
(författare)
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Germinal matrix hemorrhage induces immune responses, brain injury, and motor impairment in neonatal rats
- 2023
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Ingår i: Journal of Cerebral Blood Flow and Metabolism. - : SAGE Publications. - 0271-678X .- 1559-7016. ; 43:2_suppl, s. 49-65
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Tidskriftsartikel (refereegranskat)abstract
- Germinal matrix hemorrhage (GMH) is a major complication of prematurity that causes secondary brain injury and is associated with long-term neurological disabilities. This study used a postnatal day 5 rat model of GMH to explore immune response, brain injury, and neurobehavioral changes after hemorrhagic injury. The results showed that CD45(high)/CD11b(+) immune cells increased in the brain after GMH and were accompanied by increased macrophage-related chemokine/cytokines and inflammatory mediators. Hematoma formed as early as 2 h after injection of collagenase VII and white matter injury appeared not only in the external capsule and hippocampus, but also in the thalamus. In addition, GMH caused abnormal motor function as revealed by gait analysis, and locomotor hyperactivity in the elevated plus maze, though no other obvious anxiety or recognition/memory function changes were noted when examined by the open field test and novel object recognition test. The animal model used here partially reproduces the GMH-induced brain injury and motor dysfunction seen in human neonates and therefore can be used as a valid tool in experimental studies for the development of effective therapeutic strategies for GMH-induced brain injury.
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| 3. |
- Campbell, PJ, et al.
(författare)
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Pan-cancer analysis of whole genomes
- 2020
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 578:7793, s. 82-
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Tidskriftsartikel (refereegranskat)abstract
- Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale1–3. Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4–5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter4; identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation5,6; analyses timings and patterns of tumour evolution7; describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity8,9; and evaluates a range of more-specialized features of cancer genomes8,10–18.
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| 8. |
- Zhu, J, et al.
(författare)
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The Association of Physical Activity Behaviors and Patterns With Aging Acceleration: Evidence From the UK Biobank
- 2023
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Ingår i: The journals of gerontology. Series A, Biological sciences and medical sciences. - : Oxford University Press (OUP). - 1758-535X. ; 78:5, s. 753-761
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Tidskriftsartikel (refereegranskat)abstract
- Prior evidence suggests that physical activity may reduce the risk of multiple diseases and mortality. However, whether and how physical activity affects the aging process remains largely unexplored. We included 284,479 UK Biobank participants and computed leukocyte telomere length (LTL) deviation (i.e., the difference between genetically determined and observed LTL) and biological age acceleration (BAA, defined as the discrepancy between the phenotypic age of a person and the average phenotypic age in the cohort of individuals with the same age and sex) as the indexes for aging acceleration. Linear and logistic models were used to estimate the associations of self-reported physical activity items and patterns (identified by principal component analysis), as well as accelerometer-assessed physical activity, with aging acceleration. Analyses of physical activity patterns indicated, a higher level of adherence to activity patterns predominated by strenuous sports, other exercises, walking for pleasure, heavy and light housework, and public transportation use was associated with a lower risk of aging acceleration, whereas a higher level of adherence to patterns predominated by job-related activities was associated with a higher risk of aging acceleration. Analysis among 62,418 participants with accelerometer-measured physical activity corroborated these results. Physical activity, such as strenuous sports and other exercises at leisure time and use of public transportation, was associated with a reduced biological aging. Besides highlighting the importance of engaging in physical activity for healthy aging, our results provide further evidence for the beneficial effect of physical activity on the telomere attrition process.
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