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- Kambach, S., et al.
(författare)
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How do trees respond to species mixing in experimental compared to observational studies?
- 2019
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Ingår i: Ecology and Evolution. - : Wiley. - 2045-7758. ; 9:19, s. 11254-11265
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Tidskriftsartikel (refereegranskat)abstract
- For decades, ecologists have investigated the effects of tree species diversity on tree productivity at different scales and with different approaches ranging from observational to experimental study designs. Using data from five European national forest inventories (16,773 plots), six tree species diversity experiments (584 plots), and six networks of comparative plots (169 plots), we tested whether tree species growth responses to species mixing are consistent and therefore transferrable between those different research approaches. Our results confirm the general positive effect of tree species mixing on species growth (16% on average) but we found no consistency in species-specific responses to mixing between any of the three approaches, even after restricting comparisons to only those plots that shared similar mixtures compositions and forest types. These findings highlight the necessity to consider results from different research approaches when selecting species mixtures that should maximize positive forest biodiversity and functioning relationships.
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- Bengtsson-Palme, Johan, 1985, et al.
(författare)
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Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker
- 2018
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Ingår i: Bioinformatics (Oxford, England). - : Oxford University Press (OUP). - 1367-4811 .- 1367-4803. ; 34:23, s. 4027-4033
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Tidskriftsartikel (refereegranskat)abstract
- Correct taxonomic identification of DNA sequences is central to studies of biodiversity using both shotgun metagenomic and metabarcoding approaches. However, no genetic marker gives sufficient performance across all the biological kingdoms, hampering studies of taxonomic diversity in many groups of organisms. This has led to the adoption of a range of genetic markers for DNA metabarcoding. While many taxonomic classification software tools can be re-trained on these genetic markers, they are often designed with assumptions that impair their utility on genes other than the SSU and LSU rRNA. Here, we present an update to Metaxa2 that enables the use of any genetic marker for taxonomic classification of metagenome and amplicon sequence data.We evaluated the Metaxa2 Database Builder on eleven commonly used barcoding regions and found that while there are wide differences in performance between different genetic markers, our software performs satisfactorily provided that the input taxonomy and sequence data are of high quality.Freely available on the web as part of the Metaxa2 package at http://microbiology.se/software/metaxa2/.Supplementary data are available at Bioinformatics online.
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- Windelius, Olle, 1972, et al.
(författare)
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A collinear angle-resolved photoelectron spectrometer
- 2017
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Ingår i: Nuclear Instruments and Methods in Physics Research, Section B: Beam Interactions with Materials and Atoms. - : Elsevier BV. - 0168-583X. ; 410, s. 144-152
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Tidskriftsartikel (refereegranskat)abstract
- In the present paper we describe a newly designed collinear photoelectron spectrometer for angular distribution measurements. We will henceforth refer to this instrument by the acronym PEARLS (PhotoElectron Angle-Resolved Linear Spectrometer). The design was motivated by the desire to collect electrons emitted from an extended linear source consisting of collinear photon and ion beams at a synchrotron radiation site. The electrons could be produced in either photoionization or photodetachment events. The primary advantage of a collinear beams geometry is that the effective interaction volume can be made much larger than that obtainable with a crossed beams geometry, which has been used in many earlier photoelectron spectroscopic studies. The present apparatus is capable of collecting electrons over a beam source length of 22 cm. The electrons are detected using Channel Electron Multipliers (CEMs). There are 4 detector planes placed perpendicular to the direction of the beam source, where each plane contains 4 CEMs. The use of all 4 detector planes with a total of 16 CEMs enhances the photoelectron signal, which is important at a synchrotron radiation site where the photon flux is typically low. If photoelectrons of different energies are emitted, the design allows for electrostatic energy analyzers to be placed in front of the CEMs. We have performed a photodetachment experiment to demonstrate the functionality of the PEARLS apparatus using a pulsed laser as the photon source. In particular, we have measured the angular distribution of photoelectrons ejected from Ag- at two different photon energies. © 2017 Elsevier B.V.
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