| 1. |
- Polme, S., et al.
(författare)
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FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles
- 2020
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Ingår i: Fungal Diversity. - : Springer Science and Business Media LLC. - 1560-2745 .- 1878-9129. ; 105:1, s. 1-16
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Tidskriftsartikel (refereegranskat)abstract
- The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and Fun(Fun) together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold.
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| 2. |
- Agostinelli, Marta, et al.
(författare)
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Mycobiome of Fraxinus excelsior With Different Phenotypic Susceptibility to Ash Dieback
- 2021
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Ingår i: Frontiers in Forests and Global Change. - : Frontiers Media S.A.. - 2624-893X. ; 4
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Tidskriftsartikel (refereegranskat)abstract
- For the last two decades, large-scale population decline of European ash (Fraxinus excelsior) has occurred in Europe because of the introduction of the alien fungal pathogen, Hymenoscyphus fraxineus, from East Asia. Since European ash is a keystone species having critical importance for biodiversity, and only a small percentage of the ash population appears to show some tolerance against the pathogen, the loss of ash trees means that other associated organisms, especially those with high or obligate associations to ash, are at risk of further species declines. In this study, we used high throughput DNA sequencing and multivariate analysis to characterize: (i) the mycobiome in aerial tissues (i.e., leaf, bark, and xylem) of ash trees showing different phenotypic response to ash dieback, (ii) the temporal variation in fungal communities across the growing season, and (iii) the similarity in fungal community structure between ash and other common trees species that may serve as an ecological niche substitute for ash microfungi. Results showed that fungal communities differed among the three tissue types, susceptibility classes, in time and between sites. Trophic analysis of functional groups using the FUNGuild tool indicated a higher presence of pathotrophic fungi in leaves than in bark and xylem. The share of pathotrophic fungi increased along a gradient of low to high disease susceptibility in both bark and xylem tissue, while the proportion of symbiotrophic fungi correspondingly decreased in both tissue types. Neighboring, alternative host trees did not share all the fungal species found in ash, however, most microfungi uniquely associated to ash in this study are generalists and not strictly host specific. The progressive disappearance of ash trees on the landscape imposes a high risk for extinction of Red-listed macrofungal species, and breeding for resistance against ash dieback should help sustain important biodiversity associated to ash. Microfungal diversity though may be less prone to such demise since most ash-associated endophytes appear to occur on a broad range of host species.
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| 3. |
- Agostinelli, Marta, et al.
(författare)
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Pedunculate Oaks (Quercus robur L.) Differing in Vitality as Reservoirs for Fungal Biodiversity
- 2018
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Ingår i: Frontiers in Microbiology. - : Frontiers Media S.A.. - 1664-302X. ; 9
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Tidskriftsartikel (refereegranskat)abstract
- Ecological significance of trees growing in urban and peri-urban settings is likely to increase in future land-use regimes, calling for better understanding of their role as potential reservoirs or stepping stones for associated biodiversity. We studied the diversity of fungal endophytes in woody tissues of asymptomatic even aged pedunculate oak trees, growing as amenity trees in a peri-urban setting. The trees were classified into three groups according to their phenotypic vitality (high, medium, and low). Endophytes were cultured on potato dextrose media from surface sterilized twigs and DNA sequencing was performed to reveal the taxonomic identity of the morphotypes. In xylem tissues, the frequency and diversity of endophytes was highest in oak trees showing reduced vitality. This difference was not found for bark samples, in which the endophyte infections were more frequent and communities more diverse than in xylem. In general, most taxa were shared across the samples with few morphotypes being recovered in unique samples. Leaf phenolic profiles were found to accurately classify the trees according to their phenotypic vitality. Our results confirm that xylem is more selective substrate for endophytes than bark and that endophyte assemblages in xylem are correlated to the degree of host vitality. Thus, high vitality of trees may be associated with reduced habitat quality to wood-associated endophytes.
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| 4. |
- Andersson, Pierre, et al.
(författare)
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Viridin-like steroids from Hymenoscyphus pseudoalbidus
- 2013
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Ingår i: Phytochemistry. - : Elsevier BV. - 0031-9422 .- 1873-3700. ; 86, s. 195-200
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Tidskriftsartikel (refereegranskat)abstract
- Three furanosteroids were isolated from the ash dieback causing fungus Hymenoscyphus pseudoalbidus along with the known compounds viridiol and demethoxyviridiol. The compounds were characterized by 1D and 2D NMR spectroscopy, LC-HRMS and polarimetry. (C) 2012 Elsevier Ltd. All rights reserved.
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| 5. |
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| 6. |
- Blomquist, Mimmi, et al.
(författare)
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Size matters but is big always better? Effectiveness of urea and Phlebiopsis gigantea as treatment against Heterobasidion on Picea abies stumps of variable size
- 2020
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Ingår i: Forest Ecology and Management. - : Elsevier BV. - 0378-1127 .- 1872-7042. ; 462
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Tidskriftsartikel (refereegranskat)abstract
- Heterobasidion is a severe threat to coniferous forests in the northern hemisphere. Accurate forest management is needed to safeguard the economic values at stake. In this paper we investigate the efficacy of stump treatment with urea and Phlebiopsis gigantea as control treatment in Norway spruce against airborne Heterobasidion infections. The aim of this study was to examine the infection frequency, i.e. frequency of stumps infected by airborne spores, and efficacy of the stump treatments after performing precommercial thinning and final felling, representing highly variable stump diameters. Today treatment after these cuttings are not standard practice across the world.From a total of 27 Norway spruce stands in the southern and mid-regions of Sweden, five precommercial thinning stands and five final felling stands with infection frequencies higher than an economical threshold for treatment, 20%, were selected. In these stands, the efficacy of stump treatment using urea and P. gigantea against Heterobasidion spp. was assessed on stumps of variable diameter. Wooden discs from stumps were analyzed for airborne infections of Heterobasidion spp. 7-8 weeks after treatment. To evaluate the efficacy of treatments, we used the following three different measurements; infection frequency (proportion of infected stumps), relative infected stump area and number of Heterobasidion colonies per square dm, which were tested using three different statistical models each represented by an efficacy value. Overall, untreated stumps were infected to a higher extent than treated stumps, and most infections were found in untreated stumps from final fellings. Treatment with P. gigantea was more efficient for larger sized stumps than small. In precommercial thinnings, urea performed better and had higher mean efficacy values (92-94%) compared to P. gigantea (59%-72%). In final fellings there were no significant differences between the treatments, both had high efficacy values (urea 95.5-99.8% vs P. gigantea 90-98%).Our findings point at the need for accurate stump treatment after precommercial thinning and final felling, when infection rates are likely to be high. Urea seems to be more effective than the biological control agent P. gigantea in controlling Heterobasidion infections in stumps created in precommercial thinnings. We therefore recommend to use urea in precommercial thinnings if possible. In final fellings either urea or P. gigantea can be used.
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| 7. |
- Blomquist, Mimmi, et al.
(författare)
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The potential of biological control against Heterobasidion root rot is not realized in practical forestry
- 2023
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Ingår i: Forest Ecology and Management. - : Elsevier BV. - 0378-1127 .- 1872-7042. ; 531
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Tidskriftsartikel (refereegranskat)abstract
- For about 25 years, forest managers in Sweden have been treating stumps following harvesting with Phlebiopsis gigantea, retailed as Rotstop (R) S gel, against spore infections of Heterobasidion, which cause root rot in order to minimize losses in timber production. However, not all forest managers trust the efficacy of stump treatment and this fact has hindered widespread adoption of stump treatment using P. gigantea. In this study, we evaluated stump treatment in the field during commercial thinning operations across 15 sites, by assessing the degree of stump coverage and subsequent infection levels in stump discs. In total, 45 % of all stumps were infected with Heterobasidion spp.. Nineteen percent of all stumps were considered to have full (100 %) coverage by Rotstop (R) S but contractors failed to achieve the manufacturers stipulated minimum coverage (85 %) in approximately 1/3 of all stumps. Using PCR, we could only detect the presence of P. gigantea in 73 % of the tested stumps. Large variation occurred between stump coverage and the recovery of P. gigantea in wood chip samples collected from stump discs across sites. In the worst case, we detected P. gigantea in only three out of ten treated stumps at one site. Despite this discrepancy we saw a clear reduction of the size of Heterobasidion infections on stumps where stump treatment coverage was more than 85 % of the stump surface.Our results suggest that forest operators in Sweden repeatedly fail to either apply a spore solution of P. gigantea or cover enough of the stumps to provide the desired protection. The outcome of such sub-standard application, could further undermine the usage of biological control agents in forestry and limit any potential control against Heterobasidion spp..
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| 8. |
- Chaudhary, Rajiv, et al.
(författare)
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Marker-Trait Associations for Tolerance to Ash Dieback in Common Ash (Fraxinus excelsior L.)
- 2020
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Ingår i: Forests. - : MDPI. - 1999-4907. ; 11:10
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Tidskriftsartikel (refereegranskat)abstract
- Common ash (Fraxinus excelsior L.) is a tree species of significant ecological and economic importance that has suffered a devastating decline since the 1990s in Europe. Native ash species are being threatened by the alien invasive fungus Hymenoscyphus fraxineus, which causes ash dieback. The main goal of the study was to develop markers for traits related to tolerance to ash dieback and to investigate whether genotypes selected for tolerance were genetically different from susceptible wild populations. We phenotyped 326 ash trees from Sweden for disease severity and genotyped them using 63 amplicon-derived single-nucleotide polymorphism (SNP) markers derived from genes in 40 scaffolds spanning 8 MB in total, which represents approximately 1% of the ash genome. We used a mixed linear model to test for an association between genotypic variation at these loci and disease severity of ash. In total, two SNPs were found to have significant associations. One non-synonymous SNP associated with the disease severity of ash was found in a gene predicted to encode a subtilisin-related peptidase S8/S53 domain. A second marginally significant marker was associated with an LRR gene. Our results demonstrate an inexpensive time-effective method for generating genomic data that could have potential for use in future tree breeding programs and provide information for marker-assisted selection. Our study also showed a low differentiation between genotypes selected for disease tolerance and the wild population of ash representing a range of susceptibilities to ash dieback, indicating opportunities for further selection without significantly losing genetic diversity in the ash population.
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| 9. |
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| 10. |
- Cleary, Michelle
(författare)
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A glimmer of hope - ash genotypes with increased resistance to ash dieback pathogen show cross-resistance to emerald ash borer
- 2023
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Ingår i: New Phytologist. - 0028-646X .- 1469-8137. ; 240, s. 1219-1232
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Tidskriftsartikel (refereegranskat)abstract
- Plants rely on cross-resistance traits to defend against multiple, phylogenetically distinct enemies. These traits are often the result of long co-evolutionary histories. Biological invasions can force naive plants to cope with novel, coincident pests, and pathogens. For example, European ash (Fraxinus excelsior) is substantially threatened by the emerald ash borer (EAB), Agrilus planipennis, a wood-boring beetle, and the ash dieback (ADB) pathogen, Hymenoscyphus fraxineus. Yet, plant cross-resistance traits against novel enemies are poorly explored and it is unknown whether na_ive ash trees can defend against novel enemy complexes via cross-resistance mechanisms.To gain mechanistic insights, we quantified EAB performance on grafted replicates of ash genotypes varying in ADB resistance and characterized ash phloem chemistry with targeted and untargeted metabolomics.Emerald ash borer performed better on ADB-susceptible than on ADB-resistant genotypes. Moreover, changes in EAB performance aligned with differences in phloem chemical profiles between ADB-susceptible and ADB-resistant genotypes.We show that intraspecific variation in phloem chemistry in European ash can confer increased cross-resistance to invasive antagonists from different taxonomic kingdoms. Our study suggests that promotion of ADB-resistant ash genotypes may simultaneously help to control the ADB disease and reduce EAB-caused ash losses, which may be critical for the long-term stability of this keystone tree species.
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