Sökning: WFRF:(Street Nathaniel R. 1979 ) >
High spatial resolu...
High spatial resolution profiling in tree species
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- Giacomello, Stefania (författare)
- KTH,Science for Life Laboratory, SciLifeLab,Genteknologi
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Delhomme, N. (författare)
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Niittylä, T. (författare)
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- Tuominen, Hannele, 1964- (författare)
- Umeå universitet,Umeå Plant Science Centre (UPSC),Institutionen för fysiologisk botanik
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- Street, Nathaniel R., 1979- (författare)
- Umeå universitet,Institutionen för fysiologisk botanik,Umeå Plant Science Centre (UPSC)
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visa färre...
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(creator_code:org_t)
- 2019-02-20
- 2019
- Engelska.
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Ingår i: Annual Plant Reviews Online. - : Wiley. - 2639-3832. ; 2:1, s. 329-359
- Relaterad länk:
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https://urn.kb.se/re...
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https://doi.org/10.1...
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https://urn.kb.se/re...
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Abstract
Ämnesord
Stäng
- Until recently, the majority of genomics assays have been performed on bulk tissue samples containing multiple cell types. Tissues such as the wood formation zone in trees contain a complex mix of cell types organised in three-dimensional space. Moreover, cells within the wood formation zone represent a continual developmental progression from meristematic cambial initials through to cell death. This spatiotemporal developmental gradient and cell type information are not assayed by bulk samples. New and improved sampling methods coupled to next-generation sequencing assays are enabling the generation of high spatial resolution and single-cell transcriptomics data, offering unprecedented insight into the biology of unique cell types and cell developmental programs.We overview the application of these approaches to the study of wood development, in particular, and highlight challenges associated with the analysis of such data.
Ämnesord
- NATURVETENSKAP -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Botanik (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Botany (hsv//eng)
- LANTBRUKSVETENSKAPER -- Lantbruksvetenskap, skogsbruk och fiske -- Skogsvetenskap (hsv//swe)
- AGRICULTURAL SCIENCES -- Agriculture, Forestry and Fisheries -- Forest Science (hsv//eng)
Nyckelord
- Cell type
- RNA sequencing
- Single cell
- Spatial resolution
- Transcriptome
- Wood formation
- Xylem
Publikations- och innehållstyp
- ref (ämneskategori)
- art (ämneskategori)
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