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A combined computat...
A combined computational and experimental approach predicts thrombin adsorption to zeolites
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- Li, Jiachen (författare)
- Zhejiang Univ, Dept Chem, Hangzhou 310027, Peoples R China.
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- Chen, Hao (författare)
- Zhejiang Univ, Dept Chem, Hangzhou 310027, Peoples R China.
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- Kang, Zhengzhong (författare)
- Zhejiang Univ, Dept Chem, Hangzhou 310027, Peoples R China.
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- Liu, Yingchun (författare)
- Zhejiang Univ, Dept Chem, Hangzhou 310027, Peoples R China.
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- Tu, Yaoquan (författare)
- KTH,Teoretisk kemi och biologi
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- Wang, Qi (författare)
- Zhejiang Univ, Dept Chem, Hangzhou 310027, Peoples R China.
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- Fan, Jie (författare)
- Zhejiang Univ, Dept Chem, Hangzhou 310027, Peoples R China.
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Zhejiang Univ, Dept Chem, Hangzhou 310027, Peoples R China Teoretisk kemi och biologi (creator_code:org_t)
- Elsevier BV, 2023
- 2023
- Engelska.
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Ingår i: Colloids and Surfaces B. - : Elsevier BV. - 0927-7765 .- 1873-4367. ; 221, s. 113007-
- Relaterad länk:
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
Ämnesord
Stäng
- Robust protein-nanomaterial surface analysis is important, but also a challenge. Thrombin plays an important role in the coagulant activity of protein corona mediated by Ca2+ ion exchanged zeolites. However, the mech-anism for this modulation remains unresolved. In this study, we proposed a combined computational and experimental approach to determine the adsorbed sites and orientations of thrombin binding to Ca2+-exchanged LTA-type (CaA) zeolite. Specifically, fourteen ensembles of simulated annealing molecular dynamics (SAMD) simulations and experimental surface residues microenvironment analysis were used to reduce the starting orientations needed for further molecular dynamics (MD) simulations. The combined MD simulations and pro -coagulant activity characterization also reveal the consequent corresponding deactivation of thrombin on CaA zeolite. It is mainly caused by two aspects: (1) the secondary structure of thrombin can change after its adsorption on the CaA zeolite. (2) The positively charged area of thrombin mediates the preferential interaction between thrombin and CaA zeolite. Some thrombin substrate sites are thus blocked by zeolite after its adsorption. This study not only provides a promising method for characterizing the protein-nanoparticle interaction, but also gives an insight into the design and application of zeolite with high procoagulant activity.
Ämnesord
- NATURVETENSKAP -- Kemi (hsv//swe)
- NATURAL SCIENCES -- Chemical Sciences (hsv//eng)
Nyckelord
- Thrombin
- Zeolite
- Molecular dynamics simulation
- Protein adsorption
Publikations- och innehållstyp
- ref (ämneskategori)
- art (ämneskategori)
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