Colon data from the Visual Sweden project DROID

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Skoglund, Karin,1980-Linköpings universitet,Institutionen för klinisk och experimentell medicin,Medicinska fakulteten,Region Östergötland, Klinisk patologi (author)

Colon data from the Visual Sweden project DROID

BookEnglish2019

Publisher, publication year, extent ...

2019
<p>The dataset consists of 101 H&E-stained colon whole slide images (WSI) - 52 abnormal and 49 benign cases. All significant abnormal findings identified are outlined and categorized into 15 types such as hyperplastic polyp, high grade adenocarcinoma and necrosis. Other tissue components such as mucosa, submucosa, as well as the surgical margin are delineated to create a complete histological map. In total, 756 separate annotations have been made to segment the different tissue structures and link them to ontological information.</p> s.
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Numbers

LIBRIS-ID:oai:DiVA.org:liu-166322
https://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-166322URI
https://doi.org/10.23698/aida/drcoDOI

Supplementary language notes

Language:English
Summary in:English

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SwePubSwePub

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Subject category:ovr swepub-publicationtype

Notes

One physician was responsible for the manual annotations controlled by a second pathologist. Accurate annotations were made over the whole tissues. 756 separate annotations were made.Following abnormal findings were annotated for the malign cases: acute and chronic inflammation, acute inflammation, adenocarcinoma, atrophy, chronic inflammation, diverticula, diverticulitis, dysplasia, edema, fibrosis, granulations tissue, hemorrhage, hyalinization, hyperplasia, hyperplastic polyp, inflammation, lymphoma, mucinous adenocarcinoma, necrosis, serrated adenoma, stasis, tubular adenoma, tubulovillous adenoma and ulceration.Other areas annotated: abnormal, artifact, cecum, colon, colonic mucous membrane, colonic muscularis propria, colonic submucosa, colonic subserosa, descending colon, ileum, normal, rectum, sigmoid colon and transverse colon.For the benign cases following areas were annotated: artifact, cecum, colon, colonic mucous membrane, colonic muscularis propria, colonic submucosa, colonic subserosa, descending colon, ileum, normal, rectum, sigmoid colon and transverse colon.
The dataset consists of 101 H&E-stained colon whole slide images (WSI) - 52 abnormal and 49 benign cases. All significant abnormal findings identified are outlined and categorized into 15 types such as hyperplastic polyp, high grade adenocarcinoma and necrosis. Other tissue components such as mucosa, submucosa, as well as the surgical margin are delineated to create a complete histological map. In total, 756 separate annotations have been made to segment the different tissue structures and link them to ontological information.

Subject headings and genre

MEDICIN OCH HÄLSOVETENSKAP Klinisk medicin Klinisk laboratoriemedicin hsv//swe
MEDICAL AND HEALTH SCIENCES Clinical Medicine Clinical Laboratory Medicine hsv//eng
Pathology
Colon
Cancer
Whole slide imaging
Annotated

Added entries (persons, corporate bodies, meetings, titles ...)

Lindvall, Martin,1982-Linköpings universitet,Medie- och Informationsteknik,Tekniska fakulteten,Sectra AB(Swepub:liu)marsv12 (author)
Bivik Stadler, Caroline,1986-Linköpings universitet,Medicinska fakulteten,Centrum för medicinsk bildvetenskap och visualisering, CMIV,Avdelningen för diagnostik och specialistmedicin(Swepub:liu)carbi59 (author)
Lundström, Claes,1973-Linköpings universitet,Medie- och Informationsteknik,Tekniska fakulteten,Centrum för medicinsk bildvetenskap och visualisering, CMIV(Swepub:liu)clalu03 (author)
Treanor, Darren,1974-Linköpings universitet,Institutionen för klinisk och experimentell medicin,Medicinska fakulteten,Centrum för medicinsk bildvetenskap och visualisering, CMIV,Region Östergötland, Klinisk patologi(Swepub:liu)dartr72 (author)
Linköpings universitetInstitutionen för klinisk och experimentell medicin (creator_code:org_t)

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