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Autosomal SNP typin...
Autosomal SNP typing of forensic samples with the GenPlex (TM) HID System: Results of a collaborative study
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- Tomas, C (author)
- University of Copenhagen
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- Axler-DiPerte, G (author)
- New York City Off Chief Med Examiner
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- Budimlija, Z M (author)
- New York City Off Chief Med Examiner
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- Borsting, C (author)
- University Copenhagen
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- Coble, M D (author)
- Armed Forces Institute of Pathology
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- Decker, A E (author)
- US Natl Institute Stand and Technology
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- Eisenberg, A (author)
- University of North Texas Human Identification
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- Fang, R (author)
- Appl Biosyst Inc
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- Fondevila, M (author)
- University Santiago de Compostela
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- Frisk Fredslund, S (author)
- University Copenhagen
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- Gonzalez, S (author)
- University of North Texas Human Identification
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- Hansen, A J (author)
- University Copenhagen
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- Hoff-Olsen, P (author)
- University of Oslo
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- Haas, C (author)
- University of Zurich
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- Kohler, P (author)
- University of Oslo
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- Kriegel, A K (author)
- University Hospital, Cologne
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- Lindblom, Bertil (author)
- Linköpings universitet,Rättsgenetik,Hälsouniversitetet
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- Manohar, F (author)
- Appl Biosyst Inc
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- Maronas, O (author)
- University Santiago de Compostela
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- Mogensen, H S (author)
- University Copenhagen
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- Neureuther, K (author)
- Fed Criminal Police Off, Wiesbaden
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- Nilsson, H (author)
- National Board for Forensic Medicine
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- Scheible, M K (author)
- Armed Forces Institute of Pathology
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- Schneider, P M (author)
- University Hospital, Cologne
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- Sonntag, M L (author)
- Fed Criminal Police Off, Wiesbaden
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- Stangegaard, M (author)
- University Copenhagen
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- Syndercombe-Court, D (author)
- Barts and London Queen Marys School of Medicine and Dentistry
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- Thacker, C R (author)
- Barts and London Queen Marys School of Medicine and Dentistry
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- Vallone, P M (author)
- US Natl Institute Stand and Technology
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- Westen, A A (author)
- Netherlands Forensic Institute
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- Morling, N (author)
- University Copenhagen
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(creator_code:org_t)
- Elsevier, 2011
- 2011
- English.
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In: Forensic Science International. - : Elsevier. - 1872-4973 .- 1878-0326. ; 5:5, s. 369-375
- Related links:
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https://curis.ku.dk/...
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
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- The GenPlex (TM) HID System (Applied Biosystems - AB) offers typing of 48 of the 52 SNPforID SNPs and amelogenin. Previous studies have shown a high reproducibility of the GenPlex (TM) HID System using 250500 pg DNA of good quality. An international exercise was performed by 14 laboratories (9 in Europe and 5 in the US) in order to test the robustness and reliability of the GenPlex (TM) HID System on forensic samples. Three samples with partly degraded DNA and 10 samples with low amounts of DNA were analyzed in duplicates using various amounts of DNA. In order to compare the performance of the GenPlex (TM) HID System with the most commonly used STR kits, 500 pg of partly degraded DNA from three samples was typed by the laboratories using one or more STR kits. The median SNP typing success rate was 92.3% with 500 pg of partly degraded DNA. Three of the fourteen laboratories counted for more than two thirds of the locus dropouts. The median percentage of discrepant results was 0.2% with 500 pg degraded DNA. An increasing percentage of locus dropouts and discrepant results were observed when lower amounts of DNA were used. Different success rates were observed for the various SNPs. The rs763869 SNP was the least successful. With the exception of the MiniFiler (TM) kit (AB), GenPlex (TM) HID performed better than five other tested STR kits. When partly degraded DNA was analyzed, GenPlex (TM) HID showed a very low mean mach probability, while all STR kits except MiniFiler (TM) had very limited discriminatory power.
Keyword
- GenPlex (TM) HID
- Autosomal SNPs
- Forensic science
- Degraded DNA
- MEDICINE
- MEDICIN
Publication and Content Type
- ref (subject category)
- art (subject category)
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To the university's database
- By the author/editor
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Tomas, C
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Axler-DiPerte, G
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Budimlija, Z M
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Borsting, C
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Coble, M D
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Decker, A E
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show more...
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Eisenberg, A
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Fang, R
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Fondevila, M
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Frisk Fredslund, ...
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Gonzalez, S
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Hansen, A J
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Hoff-Olsen, P
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Haas, C
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Kohler, P
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Kriegel, A K
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Lindblom, Bertil
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Manohar, F
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Maronas, O
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Mogensen, H S
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Neureuther, K
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Nilsson, H
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Scheible, M K
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Schneider, P M
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Sonntag, M L
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Stangegaard, M
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Syndercombe-Cour ...
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Thacker, C R
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Vallone, P M
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Westen, A A
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Morling, N
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- Articles in the publication
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Forensic Science ...
- By the university
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Linköping University