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Guidelines for the ...
Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes
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- Klionsky, Daniel J. (author)
- University of Michigan, USA
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- Abeliovich, Hagai (author)
- Hebrew University of Jerusalem, Israel
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- Agostinis, Patrizia (author)
- Catholic University of Louvain, Belgium
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- Agrawal, Devendra K. (author)
- Creighton University, USA
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- Aliev, Giumrakch (author)
- University of Texas San Antonio, TX USA
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- S. Askew, David (author)
- University of Cincinnati, USA
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- Baba, Misuzu (author)
- Japan Womens University, Japan
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- H. Baehrecke, Eric (author)
- University of Massachusetts, MA USA
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- A. Bahr, Ben (author)
- University of Connecticut, CT USA
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- Ballabio, Andrea (author)
- Telethon Institute Genet and Med, Italy
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- A. Bamber, Bruce (author)
- University of Toledo, OH 43606 USA
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- C. Bassham, Diane (author)
- Iowa State University, IA USA Iowa State University, IA USA
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- Bergamini, Ettore (author)
- University of Pisa, Italy
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- Bi, Xiaoning (author)
- Western University of Health Science, CA USA
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- Biard-Piechaczyk, Martine (author)
- UM2, France
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- S. Blum, Janice (author)
- Indiana University, IN 46202 USA
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- E. Breclesen, Dale (author)
- Bucks Institute Age Research, CA USA
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- L. Brodsky, Jeffrey (author)
- University of Pittsburgh, PA 15260 USA Massachusetts Gen Hospital, MA USA
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- H. Brumell, John (author)
- Hospital Sick Children, Canada
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- Brunk, Ulf T. (author)
- Linköpings universitet,Farmakologi,Hälsouniversitetet
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- Bursch, Wilfried (author)
- Medical University of Vienna, Austria
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- Camougrand, Nadine (author)
- University of Bordeaux 2, France
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- Cebollero, Eduardo (author)
- CSIC, Spain
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- Cecconi, Francesco (author)
- University of Roma Tor Vergata, Italy University of Roma Tor Vergata, Italy
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- Chen, Yingyu (author)
- Peking University, Peoples R China
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- Chin, Lih-Shen (author)
- Emory University School of Medicine
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- Choi, Augustine (author)
- Emory University, GA 30322 USA
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- T. Chu, Charleen (author)
- Harvard University, MA USA
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- Chung, Jongkyeong (author)
- University of Pittsburgh, PA USA Korea Adv Institute Science and Technology, South Korea
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- G. H. Clarke, Peter (author)
- University of Lausanne, Switzerland
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- S. B. Clark, Robert (author)
- Safar Centre Resuscitat Research, PA USA
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- G. Clarke, Steven (author)
- University of Calif Los Angeles, CA 90024 USA University of Calif Los Angeles, CA 90024 USA
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- Clave, Corinne (author)
- University of Bordeaux 2, France
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- L. Cleveland, John (author)
- Scripps Research Institute, FL USA
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- Codogno, Patrice (author)
- University of Paris 11, France INSERM, France
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- I. Colombo, Maria (author)
- University of Nacl Cuyo, Argentina
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- Coto-Montes, Ana (author)
- University of Oviedo, Spain
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- M. Cregg, James (author)
- Keck Grad Institute Appl Science, CA USA
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- Maria Cuervo, Ana (author)
- Albert Einstein Coll Med, NY 10467 USA
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- Debnath, Jayanta (author)
- University of Calif San Francisco, CA USA
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- Demarchi, Francesca (author)
- Lab Nazl Consorzio Interuniv Biotecnol, Italy University of Cincinnati, OH USA
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- B. Dennis, Patrick (author)
- USN Medical Oncol, MD 20892 USA
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- A. Dennis, Phillip (author)
- USN Medical Oncol, MD 20892 USA
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- Deretic, Vojo (author)
- University of New Mexico, NM 87131 USA
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- J. Devenish, Rodney (author)
- Monash University, Australia Monash University, Australia
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- Di Sano, Federica (author)
- University of Roma Tor Vergata, Italy
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- Fred Dice, J. (author)
- Tufts University, MA 02111 USA
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- DiFiglia, Marian (author)
- Massachusetts Gen Hospital, MA USA
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- Dinesh-Kumar, Savithramma (author)
- Yale University, CT USA
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- W. Distelhorst, Clark (author)
- Case Western Reserve University, OH 44106 USA Case Western Reserve University, OH 44106 USA University Hospital Cleveland, OH 44106 USA Case Western Reserve University, OH 44106 USA
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- Djavaheri-Mergny, Mojgan (author)
- University of Paris 11, France INSERM, France
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- C. Dorsey, Frank (author)
- The Scripps Research Institute
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- Droege, Wulf (author)
- Immunotec Research Ltd, Canada
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- Dron, Michel (author)
- INRA, France
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- A. Jr. Dunn, William (author)
- University of Florida, FL USA
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- Duszenko, Michael (author)
- University of Tubingen, Germany
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- Tony Eissa, N. (author)
- Baylor University, TX 77030 USA
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- Elazar, Zvulun (author)
- Weizmann Institute Science, Israel
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- Esclatine, Audrey (author)
- University of Paris 11, France INSERM, France
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- Eskelinen, Eeva-Liisa (author)
- University of Helsinki, Finland
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- Fesues, Laszlo (author)
- University of Debrecen, Hungary University of Debrecen, Hungary
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- D. Finley, Kim (author)
- Salk Institute Biol Studies, CA USA
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- M. Fuentes, Jose (author)
- University of Extremadura, Spain
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- Fueyo, Juan (author)
- University of Texas Houston, TX 77030 USA
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- Fujisaki, Kozo (author)
- Kagoshima University, Japan
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- Galliot, Brigitte (author)
- University of Geneva, Switzerland
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- Gao, Fen-Biao (author)
- University of Calif San Francisco, CA 94143 USA University of Calif San Francisco, CA 94143 USA
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- A. Gewirtz, David (author)
- Virginia Commonwealth University, VA USA Virginia Commonwealth University, VA USA
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- B. Gibson, Spencer (author)
- Manitoba Institute Cell Biol, Canada
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- Gohla, Antje (author)
- University of Dusseldorf, Germany
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- L. Goldberg, Alfred (author)
- Harvard University, MA USA
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- Gonzalez, Ramon (author)
- CSIC, Spain
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- Gonzalez-Estevez, Cristina (author)
- University of Nottingham, England
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- Gorski, Sharon (author)
- British Columbia Cancer Agency, Canada
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- A. Gottlieb, Roberta (author)
- San Diego State University, CA 92182 USA
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- Haussinger, Dieter (author)
- University of Dusseldorf, Germany
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- He, You-Wen (author)
- Duke University, NC USA
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- Heidenreich, Kim (author)
- University of Colorado, CO USA
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- A. Hill, Joseph (author)
- University of Texas SW Medical Centre Dallas, TX 75390 USA
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- Hoyer-Hansen, Maria (author)
- Danish Cancer Soc, Denmark Danish Cancer Soc, Denmark
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- Hu, Xun (author)
- Zhejiang University, Peoples R China
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- Huang, Wei-Pang (author)
- National Taiwan University, Taiwan
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- Iwasaki, Akiko (author)
- Yale University, CT USA
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- Jaattela, Marja (author)
- University of Debrecen, Hungary University of Debrecen, Hungary
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- T. Jackson, William (author)
- Medical Coll Wisconsin, WI 53226 USA
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- Jiang, Xuejun (author)
- Mem Sloan Kettering Cancer Centre, NY 10021 USA
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- Jin, Shengkan (author)
- University of Medical and Dent New Jersey, NJ 08854 USA
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- Johansen, Terje (author)
- University of Tromso, Norway
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- U. Jung, Jae (author)
- University of So Calif, CA USA
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- Kadowaki, Motoni (author)
- Niigata University, Japan
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- Kang, Chanhee (author)
- University of Texas SW Medical Centre Dallas, TX 75390 USA
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- Kelekar, Ameeta (author)
- University of Minnesota, MN USA
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- H. Kessel, David (author)
- Wayne State University, MI USA
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- A. K. W. Kiel, Jan (author)
- University of Groningen, Netherlands
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- Pyo Kim, Hong (author)
- University of Pittsburgh, PA USA
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- Kimchi, Adi (author)
- Weizmann Institute Science, Israel
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- J. Kinsella, Timothy (author)
- University Hospital Cleveland, OH 44106 USA
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- Kiselyov, Kirill (author)
- University of Pittsburgh, PA 15260 USA
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- Kitamoto, Katsuhiko (author)
- University of Tokyo, Japan
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- Knecht, Erwin (author)
- Centre Invest Principe Felipe, Spain
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- Komatsu, Masaaki (author)
- Tokyo Metropolitan Institute Medical Science, Japan
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- Kominami, Eiki (author)
- Juntendo University, Japan
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- Kondo, Seiji (author)
- University of Texas MD Anderson Cancer Center
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- L. Kovacs, Attila (author)
- University of Texas MD Anderson Cancer Centre, TX USA
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- Kroemer, Guido (author)
- Eotvos Lorand University, Hungary Institute Gustave Roussy, France University of Paris 11, France
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- Kuan, Chia-Yi (author)
- Cincinnati Childrens Hospital Research Fdn, OH USA
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- Kumar, Rakesh (author)
- University of Penn, PA 19104 USA
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- Kundu, Mondira (author)
- University of Laval, Canada
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- Landry, Jacques (author)
- Eastern Michigan University, MI 48197 USA
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- Laporte, Marianne (author)
- Eastern Michigan University
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- Le, Weidong (author)
- Shanghai Jiao Tong University, Peoples R China Chinese Academic Science, Peoples R China
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- Lei, Huan-Yao (author)
- National Cheng Kung University, Taiwan
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- J. Lenardo, Michael (author)
- NIAID, MD USA
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- Levine, Beth (author)
- University of Texas SW Medical Centre Dallas, TX 75390 USA University of Texas SW Medical Centre Dallas, TX 75390 USA
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- Lieberman, Andrew (author)
- University of Michigan, MI USA
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- Lim, Kah-Leong (author)
- National Institute Neurosci, Singapore
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- Lin, Fu-Cheng (author)
- Zhejiang University, Peoples R China
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- Liou, Willisa (author)
- Chang Gung University
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- F. Liu, Leroy (author)
- University of Medical and Dent New Jersey, NJ 08854 USA National Research Centre Environm and Heatlh, Germany
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- Lopez-Berestein, Gabriel (author)
- University of Texas MD Anderson Cancer Centre, TX USA
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- Lopez-Otin, Carlos (author)
- University of Oviedo, Spain
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- Lu, Bo (author)
- Vanderbilt University, TN USA
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- F. Macleod, Kay (author)
- University of Chicago, IL 60637 USA Ist Super Sanita, Italy
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- Malorni, Walter (author)
- Istituto Superiore di Sanita
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- Martinet, Wim (author)
- University of Antwerp, Belgium
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- Matsuoka, Ken (author)
- Kyushu University, Japan
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- Mautner, Josef (author)
- GSF-National Research Center for Environment and Health
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- J. Meijer, Alfred (author)
- University of Amsterdam, Netherlands
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- Melendez, Alicia (author)
- CUNY, NY USA
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- Michels, Paul (author)
- Catholic University of Louvain, Belgium Catholic University of Louvain, Belgium
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- Miotto, Giovanni (author)
- University of Padua, Italy
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- P. Mistiaen, Wilhelm (author)
- University of Coll Antwerp, Belgium
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- Mizushima, Noboru (author)
- Tokyo Medical and Dent University, Japan
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- Mograbi, Baharia (author)
- INSERM, France IFR 50, France
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- Monastyrska, Iryna (author)
- University of Utrecht, Netherlands
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- N. Moore, Michael (author)
- Plymouth Marine Lab, England
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- I. Moreira, Paula (author)
- Centre Neurosci and Cell Biol, Portugal
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- Moriyasu, Yuji (author)
- Saitama University, Japan
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- Motyl, Tomasz (author)
- Agriculture University of Warsaw, Poland
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- Muenz, Christian (author)
- Rockefeller University, NY 10021 USA
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- O. Murphy, Leon (author)
- Novartis Institute Biomed Research, MA USA
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- I. Naqvi, Naweed (author)
- National University of Singapore, Singapore
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- Neufeld, Thomas (author)
- University of Minnesota
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- Nishino, Ichizo (author)
- National Centre Neurol and Psychiat, Japan
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- A. Nixon, Ralph (author)
- NYU, NY USA
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- Noda, Takeshi (author)
- Osaka University, Japan
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- Nuernberg, Bernd (author)
- University of Dusseldorf, Germany
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- Ogawa, Michinaga (author)
- University of Tokyo, Japan
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- L. Oleinick, Nancy (author)
- Case Western Reserve University, OH USA Case Western Reserve University, OH 44106 USA Case Western Reserve University, OH 44106 USA Case Western Reserve University, OH 44106 USA
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- J. Olsen, Laura (author)
- University of Michigan, MI 48109 USA
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- Ozpolat, Bulent (author)
- University of Texas MD Anderson Cancer Centre, TX USA
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- Paglin, Shoshana (author)
- Chaim Sheba Medical Centre, Israel
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- E. Palmer, Glen (author)
- Louisiana State University, LA USA
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- Papassideri, Issidora (author)
- Department Cell Biol and Biophys, Greece
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- Parkes, Miles (author)
- University of Cambridge, England
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- H. Perlmutter, David (author)
- University of Pittsburgh, PA 15261 USA Childrens Hospital Pittsburgh, PA 15213 USA
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- Perry, George (author)
- University of Texas San Antonio, TX USA
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- Piacentini, Mauro (author)
- University of Roma Tor Vergata, Italy
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- Pinkas-Kramarski, Ronit (author)
- Tel Aviv University, Israel
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- Prescott, Mark (author)
- Monash University, Australia
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- Proikas-Cezanne, Tassula (author)
- University of Tubingen, Germany
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- Raben, Nina (author)
- NIAMSD, MD USA
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- Rami, Abdelhaq (author)
- Clin JWG University, Germany
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- Reggiori, Fulvio (author)
- University of Utrecht, Netherlands
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- Rohrer, Baerbel (author)
- Medical University of S Carolina, SC 29425 USA
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- C. Rubinsztein, David (author)
- Cambridge Institute Medical Research, England
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- M. Ryan, Kevin (author)
- Beatson Institute Cancer Research, Scotland
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- Sadoshima, Junichi (author)
- University of Medical and Dent New Jersey, NJ 07103 USA
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- Sakagami, Hiroshi (author)
- Meikai University, Japan
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- Sakai, Yasuyoshi (author)
- Kyoto University, Japan JST, Japan
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- Sandri, Marco (author)
- University of Padua, Italy Venetan Institute Molecular Med, Italy
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- Sasakawa, Chihiro (author)
- University of Tokyo, Japan
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- Sass, Miklos (author)
- University of Oslo, Norway
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- Schneider, Claudio (author)
- Laboratorio Nazionale Consorzio Interuniversitario Biotecnologie
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- O. Seglen, Per (author)
- University of Wyoming, WY 82071 USA
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- Seleverstov, Oleksandr (author)
- University of Oslo, Norway
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- Settleman, Jeffre (author)
- Massachusetts General Hospital Cancer Center
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- J. Shacka, John (author)
- University of Alabama Birmingham, AL 35294 USA
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- M. Shapiro, Irving (author)
- Thomas Jefferson University, PA 19107 USA
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- Sibirny, Andrei (author)
- National Academic Science Ukraine, Ukraine
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- C. M. Silva-Zacarin, Elaine (author)
- University of Federal Sao Carlos, Brazil
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- Simon, Hans-Uwe (author)
- University of Bern, Switzerland
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- Simone, Cristiano (author)
- Ist Ric Farmacol Mario Negri, Italy
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- Simonsen, Anne (author)
- University of Oslo, Norway Norwegian Radium Hospital, Norway
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- A. Smith, Mark (author)
- Case Western Reserve University, OH 44106 USA
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- Spanel-Borowski, Katharina (author)
- University of Leipzig, Germany
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- Srinivas, Vickram (author)
- Thomas Jefferson University, PA 19107 USA
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- Steeves, Meredith (author)
- Scripps Research Institute, FL USA
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- Stenmark, Harald (author)
- Norwegian Radium Hospital, Norway
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- E. Stromhaug, Per (author)
- University of Missouri, MO USA
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- Case Western Reserve University, OH USA Case Western Reserve University, OH USA
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- Sugimoto, Seiichiro (author)
- National Hospital Org, Japan
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- Sulzer, David (author)
- Columbia University, NY USA Columbia University, NY USA
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- Suzuki, Toshihiko (author)
- University of Ryukyus, Japan
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- S. Swanson, Michele (author)
- University of Michigan, MI 48109 USA
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- Takeshita, Fumihiko (author)
- Yokohama City University, Japan
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- J. Talbot, Nicholas. (author)
- University of Exeter, England
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- Talloczy, Zsolt (author)
- Columbia University, NY USA Columbia University, NY USA
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- Tanaka, Keiji (author)
- Tokyo Metropolitan Institute Medical Science, Japan Tohoku University, Japan
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- Tanaka, Kozo (author)
- Tokyo Metropolitan Institute Medical Science, Japan Tohoku University, Japan
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- Tanida, Isei (author)
- National Institute Infect Disease, Japan
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- S. Taylor, Graham (author)
- University of Birmingham, England
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- Paul Taylor, J. (author)
- University of Penn, PA 19104 USA
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- Terman, Alexei (author)
- Linköpings universitet,Geriatrik,Hälsouniversitetet
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- Tettamanti, Gianluca (author)
- University of Insubria, Italy
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- B. Thompson, Craig (author)
- University of Penn, PA 19104 USA
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- Thumm, Michael (author)
- University of Gottingen, Germany
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- Cancer Research UK London Research Institute, England
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- McMaster University, Canada
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- AA Bogomolets Physiol Institute, Ukraine
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- Osaka University, Japan
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- Juntendo University, Japan
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- Central University of Venezuela, Venezuela
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- van der Klei, Ida (author)
- University of Groningen, Netherlands
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- Hospital Clin Barcelona, Spain
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- Eotvos Lorand University, Hungary
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- Maryland Psychiat Research Centre, MD 21228 USA
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- Wang, Hong-Gang (author)
- H Lee Moffitt Cancer Centre and Research Institute, FL USA
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- Webster, Paul (author)
- House Ear Research Institute, CA USA
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- W. Wiley, John (author)
- University of Michigan, MI 48109 USA
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- Xi, Zhijun (author)
- Peking University, Peoples R China
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- Xiao, Gutian (author)
- University of Pittsburgh, PA USA
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- Yahalom, Joachim (author)
- Memorial Sloan-Kettering Cancer Center
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- Yang, Jin-Ming (author)
- University of Medical and Dent New Jersey, NJ USA
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- Yap, George (author)
- University of Medical and Dent New Jersey, NJ 07103 USA
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- Yin, Xiao-Min (author)
- University of Pittsburgh, PA USA
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- Yoshimori, Tamotsu (author)
- Osaka University, Japan
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- Yu, Li (author)
- NIAID, MD USA
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- Yue, Zhenyu (author)
- Mt Sinai School Med, NY USA
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- Yuzaki, Michisuke (author)
- Keio University, Japan
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- Zabirnyk, Olga (author)
- NCI, MD USA National Institute Heatlh, MD USA
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- Zheng, Xiaoxiang (author)
- Zhejiang University, Peoples R China
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- Zhu, Xiongwei (author)
- Case Western Reserve University, OH 44106 USA
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- L. Deter, Russell (author)
- Baylor University, TX 77030 USA
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- Tabas, Ira (author)
- Columbia University, NY USA
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(creator_code:org_t)
- Landes Bioscience, 2008
- 2008
- English.
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In: Autophagy. - : Landes Bioscience. - 1554-8627 .- 1554-8635. ; 4:2, s. 151-175
- Related links:
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https://urn.kb.se/re...
Abstract
Subject headings
Close
- Research in autophagy continues to accelerate,1 and as a result many new scientists are entering the field. Accordingly, it is important to establish a standard set of criteria for monitoring macroautophagy in different organisms. Recent reviews have described the range of assays that have been used for this purpose.2,3 There are many useful and convenient methods that can be used to monitor macroautophagy in yeast, but relatively few in other model systems, and there is much confusion regarding acceptable methods to measure macroautophagy in higher eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers of autophagosomes versus those that measure flux through the autophagy pathway; thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from fully functional autophagy that includes delivery to, and degradation within, lysosomes (in most higher eukaryotes) or the vacuole (in plants and fungi). Here, we present a set of guidelines for the selection and interpretation of the methods that can be used by investigators who are attempting to examine macroautophagy and related processes, as well as by reviewers who need to provide realistic and reasonable critiques of papers that investigate these processes. This set of guidelines is not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to verify an autophagic response.
Keyword
- autolysosome; autophagosome; flux; lysosome; phagophore; stress; vacuole
- TECHNOLOGY
- TEKNIKVETENSKAP
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Fesues, Laszlo
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D. Finley, Kim
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M. Fuentes, Jose
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Hu, Xun
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Huang, Wei-Pang
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Iwasaki, Akiko
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Jiang, Xuejun
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Jin, Shengkan
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Johansen, Terje
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U. Jung, Jae
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Kadowaki, Motoni
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Kang, Chanhee
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Kelekar, Ameeta
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H. Kessel, David
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A. K. W. Kiel, J ...
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Pyo Kim, Hong
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Kimchi, Adi
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J. Kinsella, Tim ...
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Kiselyov, Kirill
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Knecht, Erwin
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Komatsu, Masaaki
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Kominami, Eiki
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Kondo, Seiji
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L. Kovacs, Attil ...
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Kroemer, Guido
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Kuan, Chia-Yi
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Kumar, Rakesh
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Kundu, Mondira
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Landry, Jacques
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Le, Weidong
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Lin, Fu-Cheng
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Liou, Willisa
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I. Naqvi, Naweed
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Neufeld, Thomas
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Nishino, Ichizo
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A. Nixon, Ralph
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J. Olsen, Laura
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Ozpolat, Bulent
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Prescott, Mark
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Autophagy
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Linköping University