Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

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Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

Sagova-Mareckova, M. (författare): Czech Univ Life Sci, Czech Republic,Czech University of Life Sciences Prague

Boenigk, J. (författare): Univ Duisburg Essen, Germany,University of Duisburg-Essen

Bouchez, A. (författare): INRAE, France;Univ Savoie Mont Blanc, France,University of Savoy Mont Blanc

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Cermakova, K. (författare): ID Gene Ecodiagnost, Switzerland,ID-Gene ecodiagnostics

Chonova, T. (författare): INRAE, France;Univ Savoie Mont Blanc, France,University of Savoy Mont Blanc

Cordier, T. (författare): Univ Geneva, Switzerland,University of Geneva

Eisendle, U. (författare): Salzburg Univ, Austria,University of Salzburg

Elersek, T. (författare): Natl Inst Biol, Slovenia,National Institute of Biology Ljubljana

Fazi, S. (författare): Natl Res Council Italy, Italy,CNR Water research institute (IRSA)

Fleituch, T. (författare): Polish Acad Sci, Poland,Institute of Nature Conservation of the Polish Academy of Sciences

Fruhe, L. (författare): Tech Univ Kaiserslautern, Germany,Technical University Of Kaiserslautern,University of Duisburg-Essen

Gajdosova, M. (författare): Charles Univ Prague, Czech Republic,Charles University in Prague

Graupner, N. (författare): Univ Duisburg Essen, Germany,University of Duisburg-Essen

Haegerbaeumer, A. (författare): Bielefeld Univ, Germany,Bielefeld University

Kelly, A. -M (författare): Trinity College Dublin

Kopecky, J. (författare): Crop Res Inst, Czech Republic,Research Institute of Crop Production

Leese, F. (författare): Univ Duisburg Essen, Germany

Noges, P. (författare): Estonian Univ Life Sci, Estonia,Estonian University of Life Sciences - EMÜ,University of Duisburg-Essen

Orlic, S. (författare): Inst Ruder Boskovic, Croatia;Ctr Excellence Sci & Technol Integrating Mediterr, Croatia,Ruder Boskovic Institute

Panksep, K. (författare): Estonian Univ Life Sci, Estonia,Estonian University of Life Sciences - EMÜ

Pawlowski, J. (författare): ID Gene Ecodiagnost, Switzerland;Univ Geneva, Switzerland;Polish Acad Sci, Poland,Institute of Oceanology, PAS,University of Geneva,ID-Gene ecodiagnostics

Petrusek, A. (författare): Charles Univ Prague, Czech Republic,Charles University in Prague

Piggott, J. J. (författare): Univ Dublin, Ireland,Trinity College Dublin

Salis, R. (författare): Lund University,Lunds universitet,Enhet akvatisk ekologi,Biologiska institutionen,Naturvetenskapliga fakulteten,BECC: Biodiversity and Ecosystem services in a Changing Climate,Centrum för miljö- och klimatvetenskap (CEC),Akvatisk ekologi,Forskargrupper vid Lunds universitet,Division aquatic ecology,Department of Biology,Faculty of Science,Centre for Environmental and Climate Science (CEC),Aquatic Ecology,Lund University Research Groups

Salis, Romana K. (författare): Lund University, Sweden

Schenk, J. (författare): Bielefeld Univ, Germany,Bielefeld University

Simek, K. (författare): Biology Centre, Academy of Sciences of the Czech Republic (BC-CAS).

Stovicek, A. (författare): Czech Univ Life Sci, Czech Republic,Czech University of Life Sciences Prague

Strand, D. A. (författare): Norwegian Vet Inst, Norway,Norwegian Veterinary Institute

Vasquez, M. I. (författare): Cyprus Univ Technol, Cyprus,Cyprus University of Technology

Vralstad, T. (författare): Norwegian Vet Inst, Norway,Norwegian Veterinary Institute

Zlatkovic, S. (författare): Minist Environm Protect, Serbia;Agcy Akvatorija, Serbia,Ministry of Environmental Protection, Serbia

Zupancic, M. (författare): Natl Inst Biol, Slovenia,National Institute of Biology Ljubljana

Stoeck, T. (författare): Tech Univ Kaiserslautern, Germany,Technical University Of Kaiserslautern

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Elsevier, 2021
2021
Engelska.
Ingår i: Water Research. - : Elsevier. - 0043-1354 .- 1879-2448. ; 191

Relaterad länk:: https://doi.org/10.1...; visa fler...; https://lnu.diva-por... (primary) (Raw object); https://doi.org/10.1...; http://dx.doi.org/10... (free); https://urn.kb.se/re...; https://doi.org/10.1...; https://lup.lub.lu.s...; visa färre...

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Bioindication has become an indispensable part of water quality monitoring in most countries of the world, with the presence and abundance of bioindicator taxa, mostly multicellular eukaryotes, used for biotic indices. In contrast, microbes (bacteria, archaea and protists) are seldom used as bioindicators in routine assessments, although they have been recognized for their importance in environmental processes. Recently, the use of molecular methods has revealed unexpected diversity within known functional groups and novel metabolic pathways that are particularly important in energy and nutrient cycling. In various habitats, microbial communities respond to eutrophication, metals, and natural or anthropogenic organic pollutants through changes in diversity and function. In this review, we evaluated the common trends in these changes, documenting that they have value as bioindicators and can be used not only for monitoring but also for improving our understanding of the major processes in lotic and lentic environments. Current knowledge provides a solid foundation for exploiting microbial taxa, community structures and diversity, as well as functional genes, in novel monitoring programs. These microbial community measures can also be combined into biotic indices, improving the resolution of individual bioindicators. Here, we assess particular molecular approaches complemented by advanced bioinformatic analysis, as these are the most promising with respect to detailed bioindication value. We conclude that microbial community dynamics are a missing link important for our understanding of rapid changes in the structure and function of aquatic ecosystems, and should be addressed in the future environmental monitoring of freshwater ecosystems. (c) 2020 The Author(s). Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/ )

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NATURVETENSKAP: NATURVETENSKAP; och Biologi; och Ekologi

NATURVETENSKAP: NATURVETENSKAP; och Biologi; och Mikrobiologi

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Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

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