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Introducing guideli...
Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms
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- Nilsson, R. Henrik, 1976 (author)
- Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,University of Gothenburg, Department of Biological and Environmental Sciences, Gothenburg Global Biodiversity Centre, Box 461, 405 30 Göteborg, Sweden, Box 461
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- Andersson, Anders F. (author)
- KTH,Science for Life Laboratory, SciLifeLab,Genteknologi,Norwegian institute for nature research (NINA), P.O. Box 5685 Torgarden, NO-7485 Trondheim, Norway, P.O. Box 5685 Torgarden,KTH Royal instute of technology, Sweden
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- Bissett, Andrew (author)
- CSIRO O&A, GPO box 1533, Hobart, Tasmania, 7000, Australia, GPO box 1533
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- Finstad, Anders G. (author)
- Department of Natural History, Centre for Biodiversity Dynamics, Norwegian University of Science and Technology, Trondheim, Norway
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Fossøy, Frode (author)
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- Grosjean, Marie (author)
- Global Biodiversity Information Facility (GBIF), Secretariat, Universitetsparken 15, 2100 København Ø, Denmark, Universitetsparken 15, København Ø
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- Hope, Michael (author)
- Atlas of Living Australia, CSIRO National Collections & Marine Infrastructure, GPO Box 1700, Canberra ACT 2601, Australia, GPO Box 1700
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- Jeppesen, Thomas S. (author)
- Global Biodiversity Information Facility (GBIF), Secretariat, Universitetsparken 15, 2100 København Ø, Denmark, Universitetsparken 15, København Ø,UNESCO Intergovernmental Oceanographic Commission (IOC), Ocean Biodiversity Information System (OBIS), IOC Project Office for IODE, Oostende, Belgium
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- Kõljalg, Urmas (author)
- Natural History Museum and Botanical Garden, University of Tartu, 46 Vanemuise Street, 51003 Tartu, Estonia, 46 Vanemuise Street
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- Lundin, Daniel, 1965- (author)
- Linnéuniversitetet,Institutionen för biologi och miljö (BOM)
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- Prager, Maria (author)
- Science for Life Laboratory, Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden; Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Solna, Sweden
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- Suominen, Saara (author)
- Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark, Øster Voldgade 5-7
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Svenningsen, Cecilie S. (author)
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- Schigel, Dmitry (author)
- Global Biodiversity Information Facility (GBIF), Secretariat, Universitetsparken 15, 2100 København Ø, Denmark, Universitetsparken 15, København Ø
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(creator_code:org_t)
- 2022-08-02
- 2022
- English.
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In: Metabarcoding and Metagenomics. - : Pensoft Publishers. - 2534-9708. ; 6, s. 239-244
- Related links:
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https://doi.org/10.3...
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https://gup.ub.gu.se...
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https://doi.org/10.3...
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https://urn.kb.se/re...
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Abstract
Subject headings
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- DNA sequencing efforts of environmental and other biological samples disclose unprecedented and largely untapped opportunities for advances in the taxonomy, ecology, and geographical distributions of our living world. To realise this potential, DNA-derived occurrence data (notably sequences with dates and coordinates) – much like traditional specimens and observations – need to be discoverable and interpretable through biodiversity data platforms. The Global Biodiversity Information Facility (GBIF) recently headed a community effort to assemble a set of guidelines for publishing DNA-derived data. These guidelines target the principles and approaches of exposing DNA-derived occurrence data in the context of broader biodiversity data. They cover a choice of terms using a controlled vocabulary, common pitfalls, and good practices, without going into platform-specific details. Our hope is that they will benefit anyone interested in better exposure of DNA-derived occurrence data through general biodiversity data platforms, including national biodiversity portals. This paper provides a brief rationale and an overview of the guidelines, an up-to-date version of which is maintained at https://doi.org/10.35035/doc-vf1a-nr22. User feedback and interaction are encouraged as new techniques and best practices emerge.
Subject headings
- NATURVETENSKAP -- Biologi -- Evolutionsbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Evolutionary Biology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Biologisk systematik (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Biological Systematics (hsv//eng)
- LANTBRUKSVETENSKAPER -- Annan lantbruksvetenskap (hsv//swe)
- AGRICULTURAL SCIENCES -- Other Agricultural Sciences (hsv//eng)
- MEDICIN OCH HÄLSOVETENSKAP -- Medicinska och farmaceutiska grundvetenskaper -- Mikrobiologi inom det medicinska området (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Basic Medicine -- Microbiology in the medical area (hsv//eng)
- NATURVETENSKAP -- Biologi -- Ekologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Ecology (hsv//eng)
- LANTBRUKSVETENSKAPER -- Lantbruksvetenskap, skogsbruk och fiske (hsv//swe)
- AGRICULTURAL SCIENCES -- Agriculture, Forestry and Fisheries (hsv//eng)
- NATURVETENSKAP -- Biologi -- Botanik (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Botany (hsv//eng)
- NATURVETENSKAP -- Biologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences (hsv//eng)
- NATURVETENSKAP -- Biologi -- Zoologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Zoology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Mikrobiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Microbiology (hsv//eng)
Keyword
- biological data management
- DNA sequences
- metabarcoding
- metagenomics
- occurrence record
- open data
- scientific credit
- scientific reproducibility
- biological data management
- Ecology
Publication and Content Type
- ref (subject category)
- art (subject category)
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Nilsson, R. Henr ...
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Andersson, Ander ...
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Bissett, Andrew
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Finstad, Anders ...
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Fossøy, Frode
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Grosjean, Marie
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Hope, Michael
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Jeppesen, Thomas ...
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Kõljalg, Urmas
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Lundin, Daniel, ...
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Prager, Maria
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Suominen, Saara
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Svenningsen, Cec ...
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Schigel, Dmitry
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NATURAL SCIENCES
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- Articles in the publication
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Metabarcoding an ...
- By the university
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University of Gothenburg
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Royal Institute of Technology
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Linnaeus University