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  • Salek, Reza MEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridge, United Kingdom; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom (författare)

COordination of Standards in MetabOlomicS (COSMOS) : facilitating integrated metabolomics data access

  • Artikel/kapitelEngelska2015

Förlag, utgivningsår, omfång ...

  • 2015-05-26
  • Springer-Verlag New York,2015
  • printrdacarrier

Nummerbeteckningar

  • LIBRIS-ID:oai:DiVA.org:oru-63706
  • https://urn.kb.se/resolve?urn=urn:nbn:se:oru:diva-63706URI
  • https://doi.org/10.1007/s11306-015-0810-yDOI

Kompletterande språkuppgifter

  • Språk:engelska
  • Sammanfattning på:engelska

Ingår i deldatabas

Klassifikation

  • Ämneskategori:ref swepub-contenttype
  • Ämneskategori:art swepub-publicationtype

Anmärkningar

  • Funding agencies:European Commission EC312941 
  • Metabolomics has become a crucial phenotyping technique in a range of research fields including medicine, the life sciences, biotechnology and the environmental sciences. This necessitates the transfer of experimental information between research groups, as well as potentially to publishers and funders. After the initial efforts of the metabolomics standards initiative, minimum reporting standards were proposed which included the concepts for metabolomics databases. Built by the community, standards and infrastructure for metabolomics are still needed to allow storage, exchange, comparison and re-utilization of metabolomics data. The Framework Programme 7 EU Initiative 'coordination of standards in metabolomics' (COSMOS) is developing a robust data infrastructure and exchange standards for metabolomics data and metadata. This is to support workflows for a broad range of metabolomics applications within the European metabolomics community and the wider metabolomics and biomedical communities' participation. Here we announce our concepts and efforts asking for re-engagement of the metabolomics community, academics and industry, journal publishers, software and hardware vendors, as well as those interested in standardisation worldwide (addressing missing metabolomics ontologies, complex-metadata capturing and XML based open source data exchange format), to join and work towards updating and implementing metabolomics standards.

Ämnesord och genrebeteckningar

Biuppslag (personer, institutioner, konferenser, titlar ...)

  • Neumann, SteffenDepartment of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Halle, Germany (författare)
  • Schober, DanielDepartment of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Halle, Germany (författare)
  • Hummel, JanMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany (författare)
  • Billiau, KennyMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany (författare)
  • Kopka, JoachimMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany (författare)
  • Correa, ElonSchool of Chemistry & Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom (författare)
  • Reijmers, TheoDivision of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University, Leiden, Netherlands (författare)
  • Rosato, AntonioMagnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino FI, Italy (författare)
  • Tenori, LeonardoMagnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino FI, Italy; FiorGen Foundation, Sesto Fiorentin FI, Italy (författare)
  • Turano, PaolaMagnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino FI, Italy (författare)
  • Marin, SilviaDepartment of Biochemistry and Molecular Biology, IBUB, Universitat de Barcelona, Barcelona, Spain (författare)
  • Deborde, CatherineINRA, Univ. Bordeaux, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux (MetaboHUB), Functional Genomics Center, IBVM, Centre INRA Bordeaux, Villenave d’Ornon, France (författare)
  • Jacob, DanielINRA, Univ. Bordeaux, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux (MetaboHUB), Functional Genomics Center, IBVM, Centre INRA Bordeaux, Villenave d’Ornon, France (författare)
  • Rolin, DominiqueINRA, Univ. Bordeaux, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux (MetaboHUB), Functional Genomics Center, IBVM, Centre INRA Bordeaux, Villenave d’Ornon, France (författare)
  • Dartigues, BenjaminCentre of bioinformatics of Bordeaux (CBiB), University of Bordeaux, Bordeaux, France (författare)
  • Conesa, PabloEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridge, United Kingdom (författare)
  • Haug, KennethEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridge, United Kingdom (författare)
  • Rocca-Serra, PhilippeUniversity of Oxford e-Research Centre, Oxford, United Kingdom (författare)
  • O'Hagan, SteveSchool of Chemistry & Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom (författare)
  • Hao, JieComputational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, London, United Kingdom (författare)
  • van Vliet, MichaelDivision of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University, Leiden, Netherlands (författare)
  • Sysi-Aho, MarkoZora Biosciences OY, Espoo, Finland (författare)
  • Ludwig, ChristianSchool of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom (författare)
  • Bouwman, JildauMicrobiology & Systems Biology TNO, Zeist, Netherlands (författare)
  • Cascante, MartaDepartment of Biochemistry and Molecular Biology, IBUB, Universitat de Barcelona, Barcelona, Spain (författare)
  • Ebbels, TimothyComputational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, London, United Kingdom (författare)
  • Griffin, Julian LMedical Research Council Human Nutrition Research, Cambridge, United Kingdom; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom (författare)
  • Moing, AnnickINRA, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux (MetaboHUB), Functional Genomics Center (IBVM), Centre INRA Bordeaux Villenave d’Ornon, Univ. Bordeaux, Bordeaux, France (författare)
  • Nikolski, MachaUniversity of Bordeaux CBiB/LaBRI, Bordeaux, France (författare)
  • Oresic, Matej,1967-Örebro universitet,Institutionen för medicinska vetenskaper,Zora Biosciences OY, Espoo, Finland(Swepub:oru)moc (författare)
  • Sansone, Susanna-AssuntaUniversity of Oxford e-Research Centre, Oxford, United Kingdom (författare)
  • Viant, Mark R.School of Biosciences, University of Birmingham Edgbaston, Birmingham, United Kingdom (författare)
  • Goodacre, RoystonSchool of Chemistry & Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom (författare)
  • Günther, Ulrich LSchool of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom (författare)
  • Hankemeier, ThomasDivision of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University, Leiden, Netherlands (författare)
  • Luchinat, ClaudioMagnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino FI, Italy (författare)
  • Walther, DirkMax Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany (författare)
  • Steinbeck, ChristophEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridge, United Kingdom (författare)
  • European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridge, United Kingdom; Department of Biochemistry, University of Cambridge, Cambridge, United KingdomDepartment of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Halle, Germany (creator_code:org_t)

Sammanhörande titlar

  • Ingår i:Metabolomics: Springer-Verlag New York11:6, s. 1587-15971573-38821573-3890

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