Search: WFRF:(Kumar Manoj)
> (2015-2019) >
AspWood :
AspWood : High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula
-
- Sundell, David (author)
- Umeå universitet,Umeå Plant Science Centre (UPSC),Institutionen för fysiologisk botanik
-
- Street, Nathaniel R. (author)
- Umeå universitet,Umeå Plant Science Centre (UPSC),Institutionen för fysiologisk botanik
-
- Kumar, Manoj (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för skoglig genetik och växtfysiologi,Department of Forest Genetics and Plant Physiology
-
show more...
-
- Mellerowicz, Ewa (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för skoglig genetik och växtfysiologi,Department of Forest Genetics and Plant Physiology
-
- Kucukoglu, Melis (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för skoglig genetik och växtfysiologi,Department of Forest Genetics and Plant Physiology
-
- Johnsson, Christoffer (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för skoglig genetik och växtfysiologi,Department of Forest Genetics and Plant Physiology
-
- Kumar, Vikash (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för skoglig genetik och växtfysiologi,Department of Forest Genetics and Plant Physiology
-
- Mannapperuma, Chanaka (author)
- Umeå universitet,Umeå Plant Science Centre (UPSC),Institutionen för fysiologisk botanik
-
- Delhomme, Nicolas (author)
- Umeå universitet,Umeå Plant Science Centre (UPSC),Institutionen för fysiologisk botanik,Umeå University
-
- Nilsson, Ove (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för skoglig genetik och växtfysiologi,Department of Forest Genetics and Plant Physiology
-
- Tuominen, Hannele (author)
- Umeå universitet,Umeå Plant Science Centre (UPSC),Institutionen för fysiologisk botanik
-
- Pesquet, Edouard (author)
- Umeå universitet,Stockholms universitet,Institutionen för ekologi, miljö och botanik,Umeå University, Sweden,Umeå Plant Science Centre (UPSC),Institutionen för fysiologisk botanik,Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91 Stockholm, Sweden
-
- Fischer, Urs (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för skoglig genetik och växtfysiologi,Department of Forest Genetics and Plant Physiology
-
- Niittylä, Totte (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för skoglig genetik och växtfysiologi,Department of Forest Genetics and Plant Physiology
-
- Sundberg, Björn (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för skoglig genetik och växtfysiologi,Department of Forest Genetics and Plant Physiology
-
- Hvidsten, Torgeir R. (author)
- Umeå universitet,Umeå Plant Science Centre (UPSC),Institutionen för fysiologisk botanik,Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, 1433 Ås, Norway
-
show less...
-
(creator_code:org_t)
-
- 2017-06-27
- 2017
- English.
-
In: The Plant Cell. - : Oxford University Press (OUP). - 1040-4651 .- 1532-298X. ; 29:7, s. 1585-1604
- Related links:
-
http://www.plantcell...
-
show more...
-
https://doi.org/10.1...
-
https://urn.kb.se/re...
-
https://doi.org/10.1...
-
https://urn.kb.se/re...
-
https://res.slu.se/i...
-
show less...
Abstract
Subject headings
Close
- Trees represent the largest terrestrial carbon sink and a renewable source of ligno-cellulose. There is significant scope for yield and quality improvement in these largely undomesticated species, and efforts to engineer elite varieties will benefit from improved understanding of the transcriptional network underlying cambial growth and wood formation. We generated high-spatial-resolution RNA sequencing data spanning the secondary phloem, vascular cambium, and wood-forming tissues of Populus tremula. The transcriptome comprised 28,294 expressed, annotated genes, 78 novel protein-coding genes, and 567 putative long intergenic noncoding RNAs. Most paralogs originating from the Salicaceae whole-genome duplication had diverged expression, with the exception of those highly expressed during secondary cell wall deposition. Coexpression network analyses revealed that regulation of the transcriptome underlying cambial growth and wood formation comprises numerous modules forming a continuum of active processes across the tissues. A comparative analysis revealed that a majority of these modules are conserved in Picea abies. The high spatial resolution of our data enabled identification of novel roles for characterized genes involved in xylan and cellulose biosynthesis, regulators of xylem vessel and fiber differentiation and lignification. An associated web resource (AspWood, http://aspwood.popgenie.org) provides interactive tools for exploring the expression profiles and coexpression network.
Subject headings
- NATURVETENSKAP -- Biologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences (hsv//eng)
- NATURVETENSKAP -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
- LANTBRUKSVETENSKAPER -- Lantbruksvetenskap, skogsbruk och fiske -- Trävetenskap (hsv//swe)
- AGRICULTURAL SCIENCES -- Agriculture, Forestry and Fisheries -- Wood Science (hsv//eng)
- NATURVETENSKAP -- Biologi -- Botanik (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Botany (hsv//eng)
- NATURVETENSKAP -- Biologi -- Utvecklingsbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Developmental Biology (hsv//eng)
Publication and Content Type
- ref (subject category)
- art (subject category)
Find in a library
To the university's database
- By the author/editor
-
Sundell, David
-
Street, Nathanie ...
-
Kumar, Manoj
-
Mellerowicz, Ewa
-
Kucukoglu, Melis
-
Johnsson, Christ ...
-
show more...
-
Kumar, Vikash
-
Mannapperuma, Ch ...
-
Delhomme, Nicola ...
-
Nilsson, Ove
-
Tuominen, Hannel ...
-
Pesquet, Edouard
-
Fischer, Urs
-
Niittylä, Totte
-
Sundberg, Björn
-
Hvidsten, Torgei ...
-
show less...
- About the subject
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Bioinformatics a ...
-
- AGRICULTURAL SCIENCES
-
AGRICULTURAL SCI ...
-
and Agriculture Fore ...
-
and Wood Science
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Botany
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Developmental Bi ...
- Articles in the publication
-
The Plant Cell
- By the university
-
Stockholm University
-
Umeå University
-
Swedish University of Agricultural Sciences