Search: onr:"swepub:oai:DiVA.org:su-196360"
> (2021) >
Chromosome Level As...
-
Celorio-Mancera, Maria de la PazStockholms universitet,Zoologiska institutionen
(author)
Chromosome Level Assembly of the Comma Butterfly (Polygonia c-album)
- Article/chapterEnglish2021
Publisher, publication year, extent ...
-
2021-03-22
-
Oxford University Press (OUP),2021
-
printrdacarrier
Numbers
-
LIBRIS-ID:oai:DiVA.org:su-196360
-
https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-196360URI
-
https://doi.org/10.1093/gbe/evab054DOI
Supplementary language notes
-
Language:English
-
Summary in:English
Part of subdatabase
Classification
-
Subject category:ref swepub-contenttype
-
Subject category:art swepub-publicationtype
Notes
-
The comma butterfly (Polygonia c-album, Nymphalidae, Lepidoptera) is a model insect species, most notably in the study of phenotypic plasticity and plant-insect coevolutionary interactions. In order to facilitate the integration of genomic tools with a diverse body of ecological and evolutionary research, we assembled the genome of a Swedish comma using 10X sequencing, scaffolding with matepair data, genome polishing, and assignment to linkage groups using a high-density linkage map. The resulting genome is 373 Mb in size, with a scaffold N50 of 11.7 Mb and contig N50 of 11,2Mb. The genome contained 90.1% of single-copy Lepidopteran orthologs in a BUSCO analysis of 5,286 genes. A total of 21,004 gene-models were annotated on the genome using RNA-Seq data from larval and adult tissue in combination with proteins from the Arthropoda database, resulting in a high-quality annotation for which functional annotations were generated. We further documented the quality of the chromosomal assembly via synteny assessment with Melitaea cinxia. The resulting annotated, chromosome-level genome will provide an important resource for investigating coevolutionary dynamics and comparative analyses in Lepidoptera.
Subject headings and genre
Added entries (persons, corporate bodies, meetings, titles ...)
-
Rastas, Pasi
(author)
-
Steward, Rachel A.Stockholms universitet,Zoologiska institutionen(Swepub:su)rast4916
(author)
-
Nylin, SörenStockholms universitet,Zoologiska institutionen(Swepub:su)snylin
(author)
-
Wheat, Christopher W.Stockholms universitet,Zoologiska institutionen(Swepub:su)cwhea
(author)
-
Stockholms universitetZoologiska institutionen
(creator_code:org_t)
Related titles
-
In:Genome Biology and Evolution: Oxford University Press (OUP)13:51759-6653
Internet link
Find in a library
To the university's database