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Detecting macroecol...
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Ramirez, Kelly S.
(author)
Detecting macroecological patterns in bacterial communities across independent studies of global soils
- Article/chapterEnglish2018
Publisher, publication year, extent ...
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2017-11-20
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NATURE PUBLISHING GROUP,2018
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printrdacarrier
Numbers
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LIBRIS-ID:oai:DiVA.org:umu-144334
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https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-144334URI
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https://doi.org/10.1038/s41564-017-0062-xDOI
Supplementary language notes
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Language:English
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Summary in:English
Part of subdatabase
Classification
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Subject category:ref swepub-contenttype
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Subject category:art swepub-publicationtype
Notes
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The emergence of high-throughput DNA sequencing methods provides unprecedented opportunities to further unravel bacterial biodiversity and its worldwide role from human health to ecosystem functioning. However, despite the abundance of sequencing studies, combining data from multiple individual studies to address macroecological questions of bacterial diversity remains methodically challenging and plagued with biases. Here, using a machine-learning approach that accounts for differences among studies and complex interactions among taxa, we merge 30 independent bacterial data sets comprising 1,998 soil samples from 21 countries. Whereas previous meta-analysis efforts have focused on bacterial diversity measures or abundances of major taxa, we show that disparate amplicon sequence data can be combined at the taxonomy-based level to assess bacterial community structure. We find that rarer taxa are more important for structuring soil communities than abundant taxa, and that these rarer taxa are better predictors of community structure than environmental factors, which are often confounded across studies. We conclude that combining data from independent studies can be used to explore bacterial community dynamics, identify potential 'indicator' taxa with an important role in structuring communities, and propose hypotheses on the factors that shape bacterial biogeography that have been overlooked in the past.
Subject headings and genre
Added entries (persons, corporate bodies, meetings, titles ...)
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Knight, Christopher G.
(author)
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de Hollander, Mattias
(author)
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Brearley, Francis Q.
(author)
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Constantinides, Bede
(author)
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Cotton, Anne
(author)
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Creer, Si
(author)
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Crowther, Thomas W.
(author)
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Davison, John
(author)
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Delgado-Baquerizo, Manuel
(author)
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Dorrepaal, EllenUmeå universitet,Institutionen för ekologi, miljö och geovetenskap(Swepub:umu)eldo0004
(author)
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Elliott, David R.
(author)
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Fox, Graeme
(author)
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Griffiths, Robert I.
(author)
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Hale, Chris
(author)
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Hartman, Kyle
(author)
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Houlden, Ashley
(author)
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Jones, David L.
(author)
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Krab, Eveline J.Umeå universitet,Institutionen för ekologi, miljö och geovetenskap(Swepub:umu)evkr0017
(author)
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Maestre, Fernando T.
(author)
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McGuire, Krista L.
(author)
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Monteux, SylvainUmeå universitet,Institutionen för ekologi, miljö och geovetenskap(Swepub:umu)symo0005
(author)
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Orr, Caroline H.
(author)
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van der Putten, Wim H.
(author)
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Roberts, Ian S.
(author)
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Robinson, David A.
(author)
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Rocca, Jennifer D.
(author)
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Rowntree, Jennifer
(author)
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Schlaeppi, Klaus
(author)
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Shepherd, Matthew
(author)
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Singh, Brajesh K.
(author)
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Straathof, Angela L.
(author)
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Bhatnagar, Jennifer M.
(author)
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Thion, Cecile
(author)
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van der Heijden, Marcel G. A.
(author)
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de Vries, Franciska T.
(author)
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Umeå universitetInstitutionen för ekologi, miljö och geovetenskap
(creator_code:org_t)
Related titles
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In:Nature Microbiology: NATURE PUBLISHING GROUP3:2, s. 189-1962058-5276
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Ramirez, Kelly S ...
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Knight, Christop ...
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de Hollander, Ma ...
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Brearley, Franci ...
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Constantinides, ...
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Cotton, Anne
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Creer, Si
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Crowther, Thomas ...
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Davison, John
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Delgado-Baqueriz ...
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Dorrepaal, Ellen
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Elliott, David R ...
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Fox, Graeme
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Griffiths, Rober ...
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Hale, Chris
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Hartman, Kyle
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Houlden, Ashley
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Jones, David L.
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Krab, Eveline J.
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Maestre, Fernand ...
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McGuire, Krista ...
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Monteux, Sylvain
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Orr, Caroline H.
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van der Putten, ...
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Roberts, Ian S.
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Robinson, David ...
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Rocca, Jennifer ...
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Rowntree, Jennif ...
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Schlaeppi, Klaus
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Shepherd, Matthe ...
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Singh, Brajesh K ...
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Straathof, Angel ...
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Bhatnagar, Jenni ...
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Thion, Cecile
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van der Heijden, ...
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de Vries, Franci ...
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- About the subject
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Microbiology
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Nature Microbiol ...
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Umeå University