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  • Capo, EricUmeå universitet,Institutionen för ekologi, miljö och geovetenskap,Department of Marine Biology, Institut de Ciències del Mar, CSIC, Barcelona, Spain,Umeå Univ, Dept Ecol & Environm Sci, S-90736 Umeå, Sweden. (author)

Lake sedimentary dna research on past terrestrial and aquatic biodiversity: Overview and recommendations

  • Article/chapterEnglish2021

Publisher, publication year, extent ...

  • 2021-02-13
  • MDPI,2021
  • electronicrdacarrier

Numbers

  • LIBRIS-ID:oai:DiVA.org:umu-182945
  • https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-182945URI
  • https://doi.org/10.3390/quat4010006DOI
  • https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-440931URI

Supplementary language notes

  • Language:English
  • Summary in:English

Part of subdatabase

Classification

  • Subject category:ref swepub-contenttype
  • Subject category:for swepub-publicationtype

Notes

  • The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original case studies, we synthesize the state-of-the-art analytical procedures for effective sampling, extraction, amplification, quantification and/or generation of DNA inventories from sedimentary ancient DNA (sedaDNA) via high-throughput sequencing technologies. We provide recommendations based on current knowledge and best practises.

Subject headings and genre

Added entries (persons, corporate bodies, meetings, titles ...)

  • Giguet-Covex, CharlineDepartment Environment, Dynamics and Territories of the Mountains (EDYTEM), UMR 5204, CNRS, University Savoie Mont Blanc, Le Bourget du Lac, France,Univ Savoie Mt Blanc, Dept Environm Dynam & Terr Mt EDYTEM, UMR 5204, CNRS, F-73370 Le Bourget Du Lac, France. (author)
  • Rouillard, AlexandraDepartment of Geosciences, UiT the Arctic University of Norway, Tromsø, Norway; Section for Geogenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark,UiT Arctic Univ Norway, Dept Geosci, N-9019 Tromso, Norway.;Univ Copenhagen, GLOBE Inst, Sect Geogenet, DK-1350 Copenhagen, Denmark.(Swepub:umu)alro0107 (author)
  • Nota, KevinUppsala universitet,Växtekologi och evolution(Swepub:uu)kevno941 (author)
  • Heintzman, Peter D.The Arctic University Museum of Norway, UiT the Arctic University of Norway, Tromsø, Norway,UiT Arctic Univ Norway, Arctic Univ Museum Norway, N-9010 Tromso, Norway.,Univ Clermont Auvergne, LMGE, UMR CNRS 6023, F-63000 Clermont Ferrand, France. (author)
  • Vuillemin, AurèleDepartment of Earth & Environmental Sciences, Ludwig-Maximilians-Universität München, Munich, Germany; GeoBio-Center LMU, Ludwig-Maximilians-Universität München, Munich, Germany,Ludwig Maximilians Univ Munchen, Dept Earth & Environm Sci, D-80331 Munich, Germany.;Ludwig Maximilians Univ Munchen, GeoBio Ctr LMU, D-80331 Munich, Germany. (author)
  • Ariztegui, DanielDepartment of Earth Sciences, University of Geneva, Geneva, Switzerland,Univ Geneva, Dept Earth Sci, CH-1205 Geneva, Switzerland. (author)
  • Arnaud, FabienDepartment Environment, Dynamics and Territories of the Mountains (EDYTEM), UMR 5204, CNRS, University Savoie Mont Blanc, Le Bourget du Lac, France,Univ Savoie Mt Blanc, Dept Environm Dynam & Terr Mt EDYTEM, UMR 5204, CNRS, F-73370 Le Bourget Du Lac, France. (author)
  • Belle, SimonDepartment of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Uppsala, Sweden,Swedish Univ Agr Sci, Dept Aquat Sci & Assessment, S-75007 Uppsala, Sweden. (author)
  • Bertilsson, StefanDepartment of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Uppsala, Sweden,Swedish Univ Agr Sci, Dept Aquat Sci & Assessment, S-75007 Uppsala, Sweden. (author)
  • Bigler, ChristianUmeå universitet,Institutionen för ekologi, miljö och geovetenskap,Umeå Univ, Dept Ecol & Environm Sci, S-90736 Umeå, Sweden.(Swepub:umu)chbi0001 (author)
  • Bindler, Richard,1963-Umeå universitet,Institutionen för ekologi, miljö och geovetenskap,Umeå Univ, Dept Ecol & Environm Sci, S-90736 Umeå, Sweden.(Swepub:umu)ribi0001 (author)
  • Brown, Antony G.The Arctic University Museum of Norway, UiT the Arctic University of Norway, Tromsø, Norway; School of Geography and Environmental Science, University of Southampton, Southampton, United Kingdom,UiT Arctic Univ Norway, Arctic Univ Museum Norway, N-9010 Tromso, Norway.;Univ Southampton, Sch Geog & Environm Sci, Southampton SO17 1BJ, Hants, England. (author)
  • Clarke, Charlotte L.School of Geography and Environmental Science, University of Southampton, Southampton, United Kingdom,Univ Southampton, Sch Geog & Environm Sci, Southampton SO17 1BJ, Hants, England. (author)
  • Crump, Sarah E.Institute of Arctic and Alpine Research, University of Colorado Boulder, CO, Boulder, United States,Univ Colorado, Inst Arctic & Alpine Res, Boulder, CO 80309 USA. (author)
  • Debroas, DidierLMGE, UMR CNRS 6023, University Clermont Auvergne, Clermont-Ferrand, France (author)
  • Englund, GöranUmeå universitet,Institutionen för ekologi, miljö och geovetenskap,Umeå Univ, Dept Ecol & Environm Sci, S-90736 Umeå, Sweden.(Swepub:umu)goen0001 (author)
  • Ficetola, Gentile FrancescoDepartment of Environmental Science and Policy, University of Milan, Milan, Italy; Laboratoire d’Écologie Alpine (LECA), University Grenoble Alpes, CNRS, Grenoble, France,Univ Milan, Dept Environm Sci & Policy, I-20122 Milan, Italy.;Univ Grenoble Alpes, Lab Ecol Alpine LECA, CNRS, F-38000 Grenoble, France. (author)
  • Garner, Rebecca E.Department of Biology, Concordia University, QC, Montréal, Canada; Groupe de Recherche Interuniversitaire en Limnologie, QC, Montréa, Canada,Concordia Univ, Dept Biol, Montreal, PQ H3G 1M8, Canada.;Grp Rech Interuniv Limnol, Montreal, PQ H3C 3J7, Canada. (author)
  • Gauthier, JoannaGroupe de Recherche Interuniversitaire en Limnologie, QC, Montréa, Canada; Department of Biology, University McGill, QC, Montréal, Canada,Grp Rech Interuniv Limnol, Montreal, PQ H3C 3J7, Canada.;McGill Univ, Dept Biol, Montreal, PQ H3A 0G4, Canada. (author)
  • Gregory-Eaves, IreneGroupe de Recherche Interuniversitaire en Limnologie, QC, Montréa, Canada; Department of Biology, University McGill, QC, Montréal, Canada,Grp Rech Interuniv Limnol, Montreal, PQ H3C 3J7, Canada.;McGill Univ, Dept Biol, Montreal, PQ H3A 0G4, Canada. (author)
  • Heinecke, LivAlfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Potsdam, Germany; Institute for Mathematics, University of Potsdam, Potsdam, Germany,Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, D-27570 Potsdam, Germany.;Univ Potsdam, Inst Math, D-14469 Potsdam, Germany. (author)
  • Herzschuh, UlrikeAlfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Potsdam, Germany; Institute for Environmental Sciences and Geography, University of Potsdam, Potsdam, Germany,Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, D-27570 Potsdam, Germany.;Univ Potsdam, Inst Environm Sci & Geog, D-14469 Potsdam, Germany. (author)
  • Ibrahim, AnanDepartment of Biology, University of Konstanz, Konstanz, Germany,Univ Konstanz, Dept Biol, D-78464 Constance, Germany. (author)
  • Kisand, VeljoInstitute of Technology, University of Tartu, Tartu, Estonia,Univ Tartu, Inst Technol, EE-50090 Tartu, Estonia. (author)
  • Kjær, Kurt H.Section for Geogenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark (author)
  • Lammers, YouriThe Arctic University Museum of Norway, UiT the Arctic University of Norway, Tromsø, Norway,UiT Arctic Univ Norway, Arctic Univ Museum Norway, N-9010 Tromso, Norway. (author)
  • Littlefair, JoanneSchool of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom,Queen Mary Univ London, Sch Biol & Chem Sci, London E1 4NS, England.,Curtin Univ, Western Australia Organ & Isotope Geochem Ctr, Sch Earth & Planetary Sci, Inst Geosci Res TIGeR, Bentley, WA 6102, Australia. (author)
  • Messager, ErwanDepartment Environment, Dynamics and Territories of the Mountains (EDYTEM), UMR 5204, CNRS, University Savoie Mont Blanc, Le Bourget du Lac, France,Univ Savoie Mt Blanc, Dept Environm Dynam & Terr Mt EDYTEM, UMR 5204, CNRS, F-73370 Le Bourget Du Lac, France. (author)
  • Monchamp, Marie-EveGroupe de Recherche Interuniversitaire en Limnologie, QC, Montréa, Canada; Department of Biology, University McGill, QC, Montréal, Canada,Grp Rech Interuniv Limnol, Montreal, PQ H3C 3J7, Canada.;McGill Univ, Dept Biol, Montreal, PQ H3A 0G4, Canada. (author)
  • Olajos, FredrikUmeå universitet,Institutionen för ekologi, miljö och geovetenskap,Umeå Univ, Dept Ecol & Environm Sci, S-90736 Umeå, Sweden.(Swepub:umu)frol0038 (author)
  • Orsi, WilliamDepartment of Earth & Environmental Sciences, Ludwig-Maximilians-Universität München, Munich, Germany; GeoBio-Center LMU, Ludwig-Maximilians-Universität München, Munich, Germany,Ludwig Maximilians Univ Munchen, Dept Earth & Environm Sci, D-80331 Munich, Germany.;Ludwig Maximilians Univ Munchen, GeoBio Ctr LMU, D-80331 Munich, Germany. (author)
  • Pedersen, Mikkel W.Section for Geogenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark,Univ Copenhagen, GLOBE Inst, Sect Geogenet, DK-1350 Copenhagen, Denmark. (author)
  • Rijal, Dilli P.The Arctic University Museum of Norway, UiT the Arctic University of Norway, Tromsø, Norway,UiT Arctic Univ Norway, Arctic Univ Museum Norway, N-9010 Tromso, Norway. (author)
  • Rydberg, Johan,1976-Umeå universitet,Institutionen för ekologi, miljö och geovetenskap,Umeå Univ, Dept Ecol & Environm Sci, S-90736 Umeå, Sweden.(Swepub:umu)jonryg02 (author)
  • Spanbauer, TrishaDepartment of Environmental Sciences and Lake Erie Center, University of Toledo, OH, Toledo, United States,Univ Toledo, Dept Environm Sci, Toledo, OH 43606 USA.;Univ Toledo, Lake Erie Ctr, Toledo, OH 43606 USA. (author)
  • Stoof-Leichsenring, Kathleen R.Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Potsdam, Germany,Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, D-27570 Potsdam, Germany. (author)
  • Taberlet, PierreThe Arctic University Museum of Norway, UiT the Arctic University of Norway, Tromsø, Norway; Laboratoire d’Écologie Alpine (LECA), University Grenoble Alpes, CNRS, Grenoble, France,UiT Arctic Univ Norway, Arctic Univ Museum Norway, N-9010 Tromso, Norway.;Univ Grenoble Alpes, Lab Ecol Alpine LECA, CNRS, F-38000 Grenoble, France. (author)
  • Talas, LiisiInstitute of Technology, University of Tartu, Tartu, Estonia,Univ Tartu, Inst Technol, EE-50090 Tartu, Estonia. (author)
  • Thomas, CamilleDepartment of Earth Sciences, University of Geneva, Geneva, Switzerland,Univ Geneva, Dept Earth Sci, CH-1205 Geneva, Switzerland. (author)
  • Walsh, David A.Department of Biology, Concordia University, QC, Montréal, Canada,Concordia Univ, Dept Biol, Montreal, PQ H3G 1M8, Canada. (author)
  • Wang, YuchengSection for Geogenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark; Department of Zoology, University of Cambridge, Cambridge, United Kingdom,Univ Copenhagen, GLOBE Inst, Sect Geogenet, DK-1350 Copenhagen, Denmark.;Univ Cambridge, Dept Zool, Cambridge CB2 1TN, England. (author)
  • Willerslev, EskeSection for Geogenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark,Univ Copenhagen, GLOBE Inst, Sect Geogenet, DK-1350 Copenhagen, Denmark. (author)
  • van Woerkom, AnneUmeå universitet,Institutionen för ekologi, miljö och geovetenskap,Umeå Univ, Dept Ecol & Environm Sci, S-90736 Umeå, Sweden.(Swepub:umu)anva0084 (author)
  • Zimmermann, Heike H.Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Potsdam, Germany,Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, D-27570 Potsdam, Germany. (author)
  • Coolen, Marco J. L.Western Australia Organic and Isotope Geochemistry Centre, School of Earth and Planetary Sciences, the Institute for Geoscience Research (TIGeR), Curtin University, Bentley, Australia (author)
  • Epp, Laura S.Limnological Institute, Department of Biology, University of Konstanz, Konstanz, Germany,Univ Konstanz, Limnol Inst, Dept Biol, D-78464 Constance, Germany. (author)
  • Domaizon, IsabelleINRAE, University Savoie Mont Blanc, CARRTEL, Thonon les bains, France; UMR CARRTEL, Pôle R&D ECLA, Thonon les bains, France,Univ Savoie Mt Blanc, CARRTEL, INRAE, F-74200 Thonon Les Bains, France.;UMR CARRTEL, Pole R&D ECLA, F-74200 Thonon Les Bains, France. (author)
  • Alsos, Inger G.The Arctic University Museum of Norway, UiT the Arctic University of Norway, Tromsø, Norway,UiT Arctic Univ Norway, Arctic Univ Museum Norway, N-9010 Tromso, Norway. (author)
  • Parducci, Laura,1965-Uppsala universitet,Växtekologi och evolution,Sapienza Univ Rome, Dept Environm Biol, I-00185 Rome, Italy.(Swepub:uu)lapar168 (author)
  • Kjaer, Kurt H.Univ Copenhagen, GLOBE Inst, Sect Geogenet, DK-1350 Copenhagen, Denmark. (author)
  • Umeå universitetInstitutionen för ekologi, miljö och geovetenskap (creator_code:org_t)

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