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  • Thomas, MintaPublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)

Combining Asian and European genome-wide association studies of colorectal cancer improves risk prediction across racial and ethnic populations

  • Article/chapterEnglish2023

Publisher, publication year, extent ...

  • Springer Nature,2023
  • electronicrdacarrier

Numbers

  • LIBRIS-ID:oai:DiVA.org:umu-216170
  • https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-216170URI
  • https://doi.org/10.1038/s41467-023-41819-0DOI
  • http://kipublications.ki.se/Default.aspx?queryparsed=id:154072183URI

Supplementary language notes

  • Language:English
  • Summary in:English

Part of subdatabase

Classification

  • Subject category:ref swepub-contenttype
  • Subject category:art swepub-publicationtype

Notes

  • Polygenic risk scores (PRS) have great potential to guide precision colorectal cancer (CRC) prevention by identifying those at higher risk to undertake targeted screening. However, current PRS using European ancestry data have sub-optimal performance in non-European ancestry populations, limiting their utility among these populations. Towards addressing this deficiency, we expand PRS development for CRC by incorporating Asian ancestry data (21,731 cases; 47,444 controls) into European ancestry training datasets (78,473 cases; 107,143 controls). The AUC estimates (95% CI) of PRS are 0.63(0.62-0.64), 0.59(0.57-0.61), 0.62(0.60-0.63), and 0.65(0.63-0.66) in independent datasets including 1681-3651 cases and 8696-115,105 controls of Asian, Black/African American, Latinx/Hispanic, and non-Hispanic White, respectively. They are significantly better than the European-centric PRS in all four major US racial and ethnic groups (p-values < 0.05). Further inclusion of non-European ancestry populations, especially Black/African American and Latinx/Hispanic, is needed to improve the risk prediction and enhance equity in applying PRS in clinical practice.

Subject headings and genre

Added entries (persons, corporate bodies, meetings, titles ...)

  • Su, Yu-RuPublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States; Biostatistics Division, Kaiser Permanente Washington Health Research Institute, Seattle, United States (author)
  • Rosenthal, Elisabeth A.Department of Medicine (Medical Genetics), University of Washington Medical Center, WA, Seattle, United States (author)
  • Sakoda, Lori C.Public Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States; Division of Research, Kaiser Permanente Northern California, CA, Oakland, United States (author)
  • Schmit, Stephanie L.Genomic Medicine Institute, Cleveland Clinic, OH, Cleveland, United States; Population and Cancer Prevention Program, Case Comprehensive Cancer Center, Cleveland, United States (author)
  • Timofeeva, Maria N.Danish Institute for Advanced Study (DIAS), Epidemiology, Biostatistics and Biodemography, Department of Public Health, University of Southern Denmark, Odense, Denmark; Colon Cancer Genetics Group, Medical Research Council Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, Germany (author)
  • Chen, ZhishanDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt University Medical Center, TN, Nashville, United States (author)
  • Fernandez-Rozadilla, CeresInstituto de Investigacion Sanitaria de Santiago (IDIS), Choupana sn, Santiago de Compostela, Spain; Edinburgh Cancer Research Centre, Institute of Genomics and Cancer, University of Edinburgh, Crewe Road, Edinburgh, United Kingdom (author)
  • Law, Philip J.Division of Genetics and Epidemiology, The Institute of Cancer Reseach, London, United Kingdom (author)
  • Murphy, NeilNutrition and Metabolism Branch, International Agency for Research on Cancer, World Health Organization, Lyon, France (author)
  • Carreras-Torres, RobertDigestive Diseases and Microbiota Group, Girona Biomedical Research Institute (IDIBGI), Girona, Salt, Spain (author)
  • Diez-Obrero, VirginiaUnit of Biomarkers and Susceptibility, Oncology Data Analytics Program, Catalan Institute of Oncology, Barcelona, Spain; Colorectal Cancer Group, ONCOBELL Program, Bellvitge Biomedical Research Institute, Barcelona, Spain; Department of Clinical Sciences, Faculty of Medicine, University of Barcelona, Barcelona, Spain (author)
  • van Duijnhoven, Franzel J. B.Division of Human Nutrition and Health, Wageningen University & Research, Wageningen, Netherlands (author)
  • Jiang, ShangqingPublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Shin, AesunDepartment of Preventive Medicine, Seoul National University College of Medicine, Seoul National University Cancer Research Institute, Seoul, South Korea (author)
  • Wolk, AlicjaInstitute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden (author)
  • Phipps, Amanda I.Public Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States; Department of Epidemiology, University of Washington, WA, Seattle, United States (author)
  • Burnett-Hartman, AndreaInstitute for Health Research, Kaiser Permanente Colorado, CO, Denver, United States (author)
  • Gsur, Andrea.Center for Cancer Research, Medical University Vienna, Vienna, Austria (author)
  • Chan, Andrew T.Division of Gastroenterology, Massachusetts General Hospital and Harvard Medical School, MA, Boston, United States; Channing Division of Network Medicine, Brigham and Women’s Hospital and Harvard Medical School, MA, Boston, United States; Clinical and Translational Epidemiology Unit, Massachusetts General Hospital and Harvard Medical School, MA, Boston, United States; Broad Institute of Harvard and MIT, MA, Cambridge, United States; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, MA, Boston, United States; Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Harvard University, MA, Boston, United States (author)
  • Zauber, Ann G.Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, NY, New York, United States (author)
  • Wu, Anna H.University of Southern California, Preventative Medicine, CA, Los Angeles, United States (author)
  • Lindblom, AnnikaKarolinska Institutet (author)
  • Um, Caroline Y.Department of Population Science, American Cancer Society, GA, Atlanta, United States (author)
  • Tangen, Catherine M.SWOG Statistical Center, Fred Hutchinson Cancer Research Center, WA, Seattle, United States (author)
  • Gignoux, ChrisColorado Center for Personalized Medicine, University of Colorado - Anschutz Medical Campus, CO, Aurora, United States (author)
  • Newton, ChristinaDepartment of Population Science, American Cancer Society, GA, Atlanta, United States (author)
  • Haiman, Christopher A.Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, CA, Los Angeles, United States (author)
  • Qu, ConghuiPublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Bishop, D. TimothyLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, United Kingdom (author)
  • Buchanan, Daniel D.Colorectal Oncogenomics Group, Department of Clinical Pathology, The University of Melbourne, VIC, Parkville, Australia; University of Melbourne Centre for Cancer Research, Victorian Comprehensive Cancer Centre, VIC, Parkville, Australia; Genomic Medicine and Family Cancer Clinic, The Royal Melbourne Hospital, VIC, Parkville, Australia (author)
  • Crosslin, David R.Department of Bioinformatics and Medical Education, University of Washington Medical Center, WA, Seattle, United States (author)
  • Conti, David V.Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, CA, Los Angeles, United States (author)
  • Kim, Dong-HyunDepartment of Social and Preventive Medicine, Hallym University College of Medicine, Okcheon-dong, South Korea (author)
  • Hauser, ElizabethVA Cooperative Studies Program Epidemiology Center, Durham Veterans Affairs Health Care System, NC, Durham, United States; Duke Molecular Physiology Institute, Duke University Medical Center, NC, Durham, United States (author)
  • White, EmilyPublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States; Department of Epidemiology, University of Washington School of Public Health, WA, Seattle, United States (author)
  • Siegel, ErinCancer Epidemiology Program, H. Lee Moffitt Cancer Center and Research Institute, FL, Tampa, United States (author)
  • Schumacher, Fredrick R.Department of Population and Quantitative Health Sciences, Case Western Reserve University, OH, Cleveland, United States (author)
  • Rennert, GadDepartment of Community Medicine and Epidemiology, Lady Davis Carmel Medical Center, Haifa, Israel; Ruth and Bruce Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa, Israel (author)
  • Giles, Graham G.Cancer Epidemiology Division, Cancer Council Victoria, VIC, Melbourne, Australia (author)
  • Hampel, HeatherDivision of Human Genetics, Department of Internal Medicine, The Ohio State University Comprehensive Cancer Center, OH, Columbus, United States (author)
  • Brenner, HermannDivision of Clinical Epidemiology and Aging Research, German Cancer Research Center (DKFZ), Heidelberg, Germany; Division of Preventive Oncology, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), Heidelberg, Germany (author)
  • Oze, Isao.Division of Cancer Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya, Japan (author)
  • Oh, Jae Hwan.Research Institute and Hospital, National Cancer Center, South Korea, Goyang, South Korea (author)
  • Lee, Jeffrey K..Department of Gastroenterology, Kaiser Permanente San Francisco Medical Center, CA, San Francisco, United States; Department of Pathology, University of Michigan, MI, Ann Arbor, United States (author)
  • Schneider, Jennifer L.Division of Research, Kaiser Permanente Northern California, CA, Oakland, United States (author)
  • Chang-Claude, JennyDivision of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg, Germany; University Medical Centre Hamburg-Eppendorf, University Cancer Centre Hamburg (UCCH), Hamburg, Germany (author)
  • Kim, JeongseonDepartment of Cancer Biomedical Science, Graduate School of Cancer Science and Policy, National Cancer Center, Gyeonggi-do, South Korea (author)
  • Huyghe, Jeroen R.Public Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Zheng, JiayinPublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Hampe, JochenDepartment of Medicine I, University Hospital Dresden, Technische Universität Dresden (TU Dresden), Dresden, Germany (author)
  • Greenson, JoelDepartment of Pathology, University of Michigan, MI, Ann Arbor, United States (author)
  • Hopper, John L.Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, VIC, Melbourne, Australia; Department of Epidemiology, School of Public Health and Institute of Health and Environment, Seoul National University, Seoul, South Korea (author)
  • Palmer, Julie R.Slone Epidemiology Center, School of Medicine, Boston University, MA, Boston, United States (author)
  • Visvanathan, KalaDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, MD, Baltimore, United States (author)
  • Matsuo, KeitaroDivision of Molecular and Clinical Epidemiology, Aichi Cancer Center Research Institute, Nagoya, Japan (author)
  • Matsuda, KoichiLaboratory of Clinical Genome Sequencing, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, University of Tokyo, Tokyo, Japan (author)
  • Jung, Keum JiInstitute for Health Promotion, Graduate School of Public Health, Yonsei University, Seoul, South Korea (author)
  • Li, LiDepartment of Family Medicine, University of Virginia, VA, Charlottesville, United States (author)
  • Le Marchand, LoicUniversity of Hawaii Cancer Center, HI, Honolulu, United States (author)
  • Vodickova, LudmilaDepartment of Molecular Biology of Cancer, Institute of Experimental Medicine of the Czech Academy of Sciences, Prague, Czech Republic; Institute of Biology and Medical Genetics, First Faculty of Medicine, Charles University, Prague, Czech Republic; Faculty of Medicine and Biomedical Center in Pilsen, Charles University, Pilsen, Czech Republic (author)
  • Bujanda, LuisDepartment of Gastroenterology, Biodonostia Health Research Institute, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Universidad del País Vasco (UPV/EHU), San Sebastián, Spain (author)
  • Gunter, Marc J.Nutrition and Metabolism Branch, International Agency for Research on Cancer, World Health Organization, Lyon, France (author)
  • Matejcic, MarcoMoffitt Cancer Center, FL, Tampa, United States (author)
  • Jenkins, Mark A.University of Melbourne Centre for Cancer Research, Victorian Comprehensive Cancer Centre, VIC, Parkville, Australia; Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, VIC, Melbourne, Australia (author)
  • Slattery, Martha L.Department of Internal Medicine, University of Utah, UT, Salt Lake City, United States (author)
  • D’Amato, MauroDepartment of Medicine and Surgery, LUM University, Camassima, Italy; Gastrointestinal Genetics Lab, CIC bioGUNE-BRTA, Derio, Spain (author)
  • Wang, MeilinDepartment of Environmental Genomics, School of Public Health, Nanjing Medical University, Nanjing, China (author)
  • Hoffmeister, MichaelDivision of Clinical Epidemiology and Aging Research, German Cancer Research Center (DKFZ), Heidelberg, Germany (author)
  • Woods, Michael O.Memorial University of Newfoundland, Discipline of Genetics, St. John’s, Canada (author)
  • Kim, MichellePublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Song, MingyangDivision of Gastroenterology, Massachusetts General Hospital and Harvard Medical School, MA, Boston, United States; Clinical and Translational Epidemiology Unit, Massachusetts General Hospital and Harvard Medical School, MA, Boston, United States; Departments of Epidemiology and Nutrition, Harvard TH Chan School of Public Health, MA, Boston, United States (author)
  • Iwasaki, MotokiDivision of Epidemiology, National Cancer Center Institute for Cancer Control, National Cancer Center, Tokyo, Japan; Division of Cohort Research, National Cancer Center Institute for Cancer Control, National Cancer Center, Tokyo, Japan (author)
  • Du, MulongDepartment of Biostatistics, School of Public Health, Nanjing Medical University, Nanjing, China; Department of Environmental Health, Harvard T.H. Chan School of Public Health, MA, Boston, United States (author)
  • Udaltsova, NataliaDivision of Research, Kaiser Permanente Northern California, CA, Oakland, United States (author)
  • Sawada, NorieDivision of Cohort Research, National Cancer Center Institute for Cancer Control, National Cancer Center, Tokyo, Japan (author)
  • Vodicka, PavelDepartment of Molecular Biology of Cancer, Institute of Experimental Medicine of the Czech Academy of Sciences, Prague, Czech Republic; Institute of Biology and Medical Genetics, First Faculty of Medicine, Charles University, Prague, Czech Republic (author)
  • Campbell, Peter T.Department of Epidemiology and Population Health, Albert Einstein College of Medicine, NY, Bronx, United States (author)
  • Newcomb, Polly A.Public Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Cai, QiuyinDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt University Medical Center, TN, Nashville, United States (author)
  • Pearlman, RachelDivision of Human Genetics, Department of Internal Medicine, The Ohio State University Comprehensive Cancer Center, OH, Columbus, United States (author)
  • Pai, Rish K.Department of Laboratory Medicine and Pathology, Mayo Clinic Arizona, AZ, Scottsdale, United States (author)
  • Schoen, Robert E.Department of Medicine and Epidemiology, University of Pittsburgh Medical Center, PA, Pittsburgh, United States (author)
  • Steinfelder, Robert S.Public Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Haile, Robert W.Samuel Oschin Comprehensive Cancer Institute, CEDARS-SINAI, CA, Los Angeles, United States (author)
  • Vandenputtelaar, RositaDepartment of Public Health, Erasmus University Medical Center, Rotterdam, Netherlands (author)
  • Prentice, Ross L.Public Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Küry, SébastienNantes Université, CHU Nantes, Service de Génétique Médicale, Nantes, France (author)
  • Castellví-Bel, SergiGastroenterology Department, Hospital Clínic, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), University of Barcelona, Barcelona, Spain (author)
  • Tsugane, ShoichiroDivision of Cohort Research, National Cancer Center Institute for Cancer Control, National Cancer Center, Tokyo, Japan (author)
  • Berndt, Sonja I.Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, MD, Bethesda, United States (author)
  • Lee, Soo ChinNational University Cancer Institute, Singapore, Singapore (author)
  • Brezina, Stefanie.Center for Cancer Research, Medical University Vienna, Vienna, Austria (author)
  • Weinstein, Stephanie J.Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, MD, Bethesda, United States (author)
  • Chanock, Stephen J.Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, MD, Bethesda, United States (author)
  • Jee, Sun HaDepartment of Epidemiology and Health Promotion, Graduate School of Public Health, Yonsei University, Seoul, South Korea (author)
  • Kweon, Sun-SeogDepartment of Preventive Medicine, Chonnam National University Medical School, Gwangju, South Korea; Jeonnam Regional Cancer Center, Chonnam National University Hwasun Hospital, Hwasun, South Korea (author)
  • Vadaparampil, SusanDepartments of Epidemiology and Nutrition, Harvard TH Chan School of Public Health, MA, Boston, United States (author)
  • Harrison, Tabitha A.Public Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Yamaji, TaikiDivision of Epidemiology, National Cancer Center Institute for Cancer Control, National Cancer Center, Tokyo, Japan (author)
  • Keku, Temitope O.Center for Gastrointestinal Biology and Disease, University of North Carolina, NC, Chapel Hill, United States (author)
  • Vymetalkova, VeronikaDepartment of Molecular Biology of Cancer, Institute of Experimental Medicine of the Czech Academy of Sciences, Prague, Czech Republic; Institute of Biology and Medical Genetics, First Faculty of Medicine, Charles University, Prague, Czech Republic (author)
  • Arndt, VolkerDivision of Clinical Epidemiology and Aging Research, German Cancer Research Center (DKFZ), Heidelberg, Germany (author)
  • Jia, Wei-HuaState Key Laboratory of Oncology in South China, Cancer Center, Sun Yat-sen University, Guangzhou, China (author)
  • Shu, Xiao-OuVanderbilt University Medical Center, TN, Nashville, United States (author)
  • Lin, YiPublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Ahn, Yoon-OkDepartment of Preventive Medicine, Seoul National University College of Medicine, Seoul National University Cancer Research Institute, Seoul, South Korea (author)
  • Stadler, Zsofia K.Department of Medicine, Memorial Sloan Kettering Cancer Center, NY, New York, United States (author)
  • van Guelpen, BethanyUmeå universitet,Wallenberg centrum för molekylär medicin vid Umeå universitet (WCMM),Onkologi(Swepub:umu)beyvan99 (author)
  • Ulrich, Cornelia M.Huntsman Cancer Institute and Department of Population Health Sciences, University of Utah, UT, Salt Lake City, United States (author)
  • Platz, Elizabeth A.Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, MD, Baltimore, United States (author)
  • Potter, John D.Public Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Li, Christopher I.Public Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States (author)
  • Meester, ReinierDepartment of Public Health, Erasmus University Medical Center, Rotterdam, Netherlands (author)
  • Moreno, VictorOncology Data Analytics Program, Catalan Institute of Oncology-IDIBELL, L’Hospitalet de Llobregat, Barcelona, Spain; CIBER Epidemiología y Salud Pública (CIBERESP), Madrid, Spain; Department of Clinical Sciences, Faculty of Medicine, University of Barcelona, Barcelona, Spain; ONCOBEL Program, Bellvitge Biomedical Research Institute (IDIBELL), L’Hospitalet de Llobregat, Barcelona, Spain (author)
  • Figueiredo, Jane C.Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, CA, Los Angeles, United States; Department of Medicine, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, CA, Los Angeles, United States (author)
  • Casey, GrahamCenter for Public Health Genomics, University of Virginia, VA, Charlottesville, United States (author)
  • Lansdorp Vogelaar, IrisDepartment of Public Health, Erasmus University Medical Center, Rotterdam, Netherlands (author)
  • Dunlop, Malcolm G.Colon Cancer Genetics Group, Medical Research Council Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, Germany (author)
  • Gruber, Stephen B.Department of Medical Oncology & Therapeutics Research, City of Hope National Medical Center, CA, Duarte, United States (author)
  • Hayes, Richard B.Division of Epidemiology, Department of Population Health, New York University School of Medicine, NY, New York, United States (author)
  • Pharoah, Paul D. P.Department of Public Health and Primary Care, University of Cambridge, Cambridge, United Kingdom (author)
  • Houlston, Richard S.Division of Genetics and Epidemiology, The Institute of Cancer Reseach, London, United Kingdom (author)
  • Jarvik, Gail P.Department of Medicine (Medical Genetics), University of Washington Medical Center, WA, Seattle, United States (author)
  • Tomlinson, Ian P.Edinburgh Cancer Research Centre, Institute of Genomics and Cancer, University of Edinburgh, Crewe Road, Edinburgh, United Kingdom (author)
  • Zheng, WeiDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt University Medical Center, TN, Nashville, United States (author)
  • Corley, Douglas A.Division of Research, Kaiser Permanente Northern California, CA, Oakland, United States; Department of Gastroenterology, Kaiser Permanente Medical Center, CA, San Francisco, United States (author)
  • Peters, UlrikePublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States; Department of Epidemiology, University of Washington, WA, Seattle, United States (author)
  • Hsu, LiPublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States; Department of Biostatistics, University of Washington, WA, Seattle, United States (author)
  • Public Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United StatesPublic Health Sciences Division, Fred Hutchinson Cancer Center, WA, Seattle, United States; Biostatistics Division, Kaiser Permanente Washington Health Research Institute, Seattle, United States (creator_code:org_t)

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  • In:Nature Communications: Springer Nature14:12041-1723

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