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Identification of functional elements and regulatory circuits by Drosophila modENCODE.

Roy, Sushmita (author)
Ernst, Jason (author)
Kharchenko, Peter V (author)
show more...
Kheradpour, Pouya (author)
Negre, Nicolas (author)
Eaton, Matthew L (author)
Landolin, Jane M (author)
Bristow, Christopher A (author)
Ma, Lijia (author)
Lin, Michael F (author)
Washietl, Stefan (author)
Arshinoff, Bradley I (author)
Ay, Ferhat (author)
Meyer, Patrick E (author)
Robine, Nicolas (author)
Washington, Nicole L (author)
Di Stefano, Luisa (author)
Berezikov, Eugene (author)
Brown, Christopher D (author)
Candeias, Rogerio (author)
Carlson, Joseph W (author)
Carr, Adrian (author)
Jungreis, Irwin (author)
Marbach, Daniel (author)
Sealfon, Rachel (author)
Tolstorukov, Michael Y (author)
Will, Sebastian (author)
Alekseyenko, Artyom A (author)
Artieri, Carlo (author)
Booth, Benjamin W (author)
Brooks, Angela N (author)
Dai, Qi (author)
Davis, Carrie A (author)
Duff, Michael O (author)
Feng, Xin (author)
Gorchakov, Andrey A (author)
Gu, Tingting (author)
Henikoff, Jorja G (author)
Kapranov, Philipp (author)
Li, Renhua (author)
MacAlpine, Heather K (author)
Malone, John (author)
Minoda, Aki (author)
Nordman, Jared (author)
Okamura, Katsutomo (author)
Perry, Marc (author)
Powell, Sara K (author)
Riddle, Nicole C (author)
Sakai, Akiko (author)
Samsonova, Anastasia (author)
Sandler, Jeremy E (author)
Schwartz, Yuri B (author)
Rutgers University, New Jersey, USA
Sher, Noa (author)
Spokony, Rebecca (author)
Sturgill, David (author)
van Baren, Marijke (author)
Wan, Kenneth H (author)
Yang, Li (author)
Yu, Charles (author)
Feingold, Elise (author)
Good, Peter (author)
Guyer, Mark (author)
Lowdon, Rebecca (author)
Ahmad, Kami (author)
Andrews, Justen (author)
Berger, Bonnie (author)
Brenner, Steven E (author)
Brent, Michael R (author)
Cherbas, Lucy (author)
Elgin, Sarah C R (author)
Gingeras, Thomas R (author)
Grossman, Robert (author)
Hoskins, Roger A (author)
Kaufman, Thomas C (author)
Kent, William (author)
Kuroda, Mitzi I (author)
Orr-Weaver, Terry (author)
Perrimon, Norbert (author)
Pirrotta, Vincenzo (author)
Posakony, James W (author)
Ren, Bing (author)
Russell, Steven (author)
Cherbas, Peter (author)
Graveley, Brenton R (author)
Lewis, Suzanna (author)
Micklem, Gos (author)
Oliver, Brian (author)
Park, Peter J (author)
Celniker, Susan E (author)
Henikoff, Steven (author)
Karpen, Gary H (author)
Lai, Eric C (author)
MacAlpine, David M (author)
Stein, Lincoln D (author)
White, Kevin P (author)
Kellis, Manolis (author)
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 (creator_code:org_t)
American Association for the Advancement of Science (AAAS), 2010
2010
English.
In: Science (New York, N.Y.). - : American Association for the Advancement of Science (AAAS). - 1095-9203 .- 0036-8075. ; 330:6012, s. 1787-1797
  • Journal article (peer-reviewed)
Abstract Subject headings
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  • To gain insight into how genomic information is translated into cellular and developmental programs, the Drosophila model organism Encyclopedia of DNA Elements (modENCODE) project is comprehensively mapping transcripts, histone modifications, chromosomal proteins, transcription factors, replication proteins and intermediates, and nucleosome properties across a developmental time course and in multiple cell lines. We have generated more than 700 data sets and discovered protein-coding, noncoding, RNA regulatory, replication, and chromatin elements, more than tripling the annotated portion of the Drosophila genome. Correlated activity patterns of these elements reveal a functional regulatory network, which predicts putative new functions for genes, reveals stage- and tissue-specific regulators, and enables gene-expression prediction. Our results provide a foundation for directed experimental and computational studies in Drosophila and related species and also a model for systematic data integration toward comprehensive genomic and functional annotation.

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By the author/editor
Roy, Sushmita
Ernst, Jason
Kharchenko, Pete ...
Kheradpour, Pouy ...
Negre, Nicolas
Eaton, Matthew L
show more...
Landolin, Jane M
Bristow, Christo ...
Ma, Lijia
Lin, Michael F
Washietl, Stefan
Arshinoff, Bradl ...
Ay, Ferhat
Meyer, Patrick E
Robine, Nicolas
Washington, Nico ...
Di Stefano, Luis ...
Berezikov, Eugen ...
Brown, Christoph ...
Candeias, Rogeri ...
Carlson, Joseph ...
Carr, Adrian
Jungreis, Irwin
Marbach, Daniel
Sealfon, Rachel
Tolstorukov, Mic ...
Will, Sebastian
Alekseyenko, Art ...
Artieri, Carlo
Booth, Benjamin ...
Brooks, Angela N
Dai, Qi
Davis, Carrie A
Duff, Michael O
Feng, Xin
Gorchakov, Andre ...
Gu, Tingting
Henikoff, Jorja ...
Kapranov, Philip ...
Li, Renhua
MacAlpine, Heath ...
Malone, John
Minoda, Aki
Nordman, Jared
Okamura, Katsuto ...
Perry, Marc
Powell, Sara K
Riddle, Nicole C
Sakai, Akiko
Samsonova, Anast ...
Sandler, Jeremy ...
Schwartz, Yuri B
Sher, Noa
Spokony, Rebecca
Sturgill, David
van Baren, Marij ...
Wan, Kenneth H
Yang, Li
Yu, Charles
Feingold, Elise
Good, Peter
Guyer, Mark
Lowdon, Rebecca
Ahmad, Kami
Andrews, Justen
Berger, Bonnie
Brenner, Steven ...
Brent, Michael R
Cherbas, Lucy
Elgin, Sarah C R
Gingeras, Thomas ...
Grossman, Robert
Hoskins, Roger A
Kaufman, Thomas ...
Kent, William
Kuroda, Mitzi I
Orr-Weaver, Terr ...
Perrimon, Norber ...
Pirrotta, Vincen ...
Posakony, James ...
Ren, Bing
Russell, Steven
Cherbas, Peter
Graveley, Brento ...
Lewis, Suzanna
Micklem, Gos
Oliver, Brian
Park, Peter J
Celniker, Susan ...
Henikoff, Steven
Karpen, Gary H
Lai, Eric C
MacAlpine, David ...
Stein, Lincoln D
White, Kevin P
Kellis, Manolis
show less...
Articles in the publication
Science (New Yor ...
By the university
Umeå University

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