Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering

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MARC

Yoon, Chun Hong (author)

Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering

Article/chapterEnglish2011

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2011
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LIBRIS-ID:oai:DiVA.org:uu-158313
https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-158313URI
https://doi.org/10.1364/OE.19.016542DOI
https://res.slu.se/id/publ/42976URI
https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-292911URI

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Language:English
Summary in:English

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SwePubSwePub

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Subject category:ref swepub-contenttype
Subject category:art swepub-publicationtype

Notes

Single-particle experiments using X-ray Free Electron Lasers produce more than 10(5) snapshots per hour, consisting of an admixture of blank shots (no particle intercepted), and exposures of one or more particles. Experimental data sets also often contain unintentional contamination with different species. We present an unsupervised method able to sort experimental snapshots without recourse to templates, specific noise models, or user-directed learning. The results show 90% agreement with manual classification.

Subject headings and genre

NATURVETENSKAP Fysik hsv//swe
NATURAL SCIENCES Physical Sciences hsv//eng
NATURVETENSKAP Fysik Annan fysik hsv//swe
NATURAL SCIENCES Physical Sciences Other Physics Topics hsv//eng
Physics
Fysik

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Schwander, Peter (author)
Abergel, Chantal (author)
Andersson, IngerUppsala universitet,Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för molekylärbiologi,Department of Molecular Biology,Institutionen för cell- och molekylärbiologi,Molecular Biophysics(Swepub:slu)47211 (author)
Andreasson, JakobUppsala universitet,Molekylär biofysik,Institutionen för cell- och molekylärbiologi,Molecular Biophysics(Swepub:uu)jakan998 (author)
Aquila, Andrew (author)
Bajt, Sasa (author)
Barthelmess, Miriam (author)
Barty, Anton (author)
Bogan, Michael J. (author)
Bostedt, Christoph (author)
Bozek, John (author)
Chapman, Henry N. (author)
Claverie, Jean-Michel (author)
Maia, Filipe R. N. C.Uppsala universitet,Institutionen för cell- och molekylärbiologi,Molecular Biophysics(Swepub:uu)fimai103 (author)
DePonte, Daniel P. (author)
Ekeberg, TomasUppsala universitet,Molekylär biofysik,Institutionen för cell- och molekylärbiologi,Molecular Biophysics(Swepub:uu)tomek611 (author)
Epp, Sascha W. (author)
Erk, Benjamin (author)
Fleckenstein, Holger (author)
Foucar, Lutz (author)
Graafsma, Heinz (author)
Gumprecht, Lars (author)
Hajdu, JanosUppsala universitet,Molekylär biofysik,Institutionen för cell- och molekylärbiologi,Molecular Biophysics(Swepub:uu)janohajd (author)
Hampton, Christina Y. (author)
Hartmann, Andreas (author)
Hartmann, Elisabeth (author)
Hartmann, Robert (author)
Hauser, Gunter (author)
Hirsemann, Helmut (author)
Holl, Peter (author)
Kassemeyer, Stephan (author)
Kimmel, Nils (author)
Kiskinova, Maya (author)
Liang, Mengning (author)
Loh, Ne-Te Duane (author)
Lomb, Lukas (author)
Maia, Filipe R. N. C. (author)
Martin, Andrew V. (author)
Nass, Karol (author)
Pedersoli, Emanuele (author)
Reich, Christian (author)
Rolles, Daniel (author)
Rudek, Benedikt (author)
Rudenko, Artem (author)
Schlichting, Ilme (author)
Schulz, Joachim (author)
Seibert, MarvinUppsala universitet,Molekylär biofysik,Institutionen för cell- och molekylärbiologi,Molecular Biophysics(Swepub:uu)masei255 (author)
Seltzer, Virginie (author)
Shoeman, Robert L. (author)
Sierra, Raymond G. (author)
Soltau, Heike (author)
Starodub, Dmitri (author)
Steinbrener, Jan (author)
Stier, Gunter (author)
Strueder, Lothar (author)
Svenda, MartinUppsala universitet,Molekylär biofysik,Institutionen för cell- och molekylärbiologi,Molecular Biophysics(Swepub:uu)msv31659 (author)
Ullrich, Joachim (author)
Weidenspointner, Georg (author)
White, Thomas A. (author)
Wunderer, Cornelia (author)
Ourmazd, Abbas (author)
Sveriges lantbruksuniversitetInstitutionen för molekylärbiologi (creator_code:org_t)
Sveriges lantbruksuniversitet

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In:Optics Express19:17, s. 16542-165491094-4087

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By the author/editor: Yoon, Chun Hong; Schwander, Peter; Abergel, Chantal; Andersson, Inger; Andreasson, Jako ...; Aquila, Andrew; show more...; Bajt, Sasa; Barthelmess, Mir ...; Barty, Anton; Bogan, Michael J ...; Bostedt, Christo ...; Bozek, John; Chapman, Henry N ...; Claverie, Jean-M ...; Maia, Filipe R. ...; DePonte, Daniel ...; Ekeberg, Tomas; Epp, Sascha W.; Erk, Benjamin; Fleckenstein, Ho ...; Foucar, Lutz; Graafsma, Heinz; Gumprecht, Lars; Hajdu, Janos; Hampton, Christi ...; Hartmann, Andrea ...; Hartmann, Elisab ...; Hartmann, Robert; Hauser, Gunter; Hirsemann, Helmu ...; Holl, Peter; Kassemeyer, Step ...; Kimmel, Nils; Kiskinova, Maya; Liang, Mengning; Loh, Ne-Te Duane; Lomb, Lukas; Martin, Andrew V ...; Nass, Karol; Pedersoli, Emanu ...; Reich, Christian; Rolles, Daniel; Rudek, Benedikt; Rudenko, Artem; Schlichting, Ilm ...; Schulz, Joachim; Seibert, Marvin; Seltzer, Virgini ...; Shoeman, Robert ...; Sierra, Raymond ...; Soltau, Heike; Starodub, Dmitri; Steinbrener, Jan; Stier, Gunter; Strueder, Lothar; Svenda, Martin; Ullrich, Joachim; Weidenspointner, ...; White, Thomas A.; Wunderer, Cornel ...; Ourmazd, Abbas; show less...

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NATURAL SCIENCES: NATURAL SCIENCES; and Physical Science ...

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Articles in the publication: Optics Express

By the university: Uppsala University; Swedish University of Agricultural Sciences

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