Whole-genome analyses resolve early branches in the tree of life of modern birds

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Jarvis, Erich D. (author)

Whole-genome analyses resolve early branches in the tree of life of modern birds

Article/chapterEnglish2014

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American Association for the Advancement of Science (AAAS),2014
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LIBRIS-ID:oai:DiVA.org:uu-241964
https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-241964URI
https://doi.org/10.1126/science.1253451DOI
https://res.slu.se/id/publ/66558URI

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Language:English
Summary in:English

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SwePubSwePub

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Subject category:ref swepub-contenttype
Subject category:art swepub-publicationtype

Notes

To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data. We recovered a highly resolved tree that confirms previously controversial sister or close relationships. We identified the first divergence in Neoaves, two groups we named Passerea and Columbea, representing independent lineages of diverse and convergently evolved land and water bird species. Among Passerea, we infer the common ancestor of core landbirds to have been an apex predator and confirm independent gains of vocal learning. Among Columbea, we identify pigeons and flamingoes as belonging to sister clades. Even with whole genomes, some of the earliest branches in Neoaves proved challenging to resolve, which was best explained by massive protein-coding sequence convergence and high levels of incomplete lineage sorting that occurred during a rapid radiation after the Cretaceous-Paleogene mass extinction event about 66 million years ago.

Subject headings and genre

NATURVETENSKAP Biologi Evolutionsbiologi hsv//swe
NATURAL SCIENCES Biological Sciences Evolutionary Biology hsv//eng
NATURVETENSKAP Biologi Biologisk systematik hsv//swe
NATURAL SCIENCES Biological Sciences Biological Systematics hsv//eng
NATURVETENSKAP Biologi Ekologi hsv//swe
NATURAL SCIENCES Biological Sciences Ecology hsv//eng
NATURVETENSKAP Biologi Zoologi hsv//swe
NATURAL SCIENCES Biological Sciences Zoology hsv//eng
NATURVETENSKAP Biologi Bioinformatik och systembiologi hsv//swe
NATURAL SCIENCES Biological Sciences Bioinformatics and Systems Biology hsv//eng
NATURVETENSKAP Biologi Genetik hsv//swe
NATURAL SCIENCES Biological Sciences Genetics hsv//eng

Added entries (persons, corporate bodies, meetings, titles ...)

Mirarab, Siavash (author)
Aberer, Andre J. (author)
Li, Bo (author)
Houde, Peter (author)
Li, Cai (author)
Ho, Simon Y. W. (author)
Faircloth, Brant C. (author)
Nabholz, Benoit (author)
Howard, Jason T. (author)
Suh, AlexanderUppsala universitet,Evolutionsbiologi(Swepub:uu)alesu519 (author)
Weber, Claudia C.Uppsala universitet,Evolutionsbiologi(Swepub:uu)clawe467 (author)
da Fonseca, Rute R. (author)
Li, Jianwen (author)
Zhang, Fang (author)
Li, Hui (author)
Zhou, Long (author)
Narula, Nitish (author)
Liu, Liang (author)
Ganapathy, Ganesh (author)
Boussau, Bastien (author)
Bayzid, Md. Shamsuzzoha (author)
Zavidovych, Volodymyr (author)
Subramanian, Sankar (author)
Gabaldon, Toni (author)
Capella-Gutierrez, Salvador (author)
Huerta-Cepas, Jaime (author)
Rekepalli, Bhanu (author)
Munch, Kasper (author)
Schierup, Mikkel (author)
Lindow, Bent (author)
Warren, Wesley C. (author)
Ray, David (author)
Green, Richard E. (author)
Bruford, Michael W. (author)
Zhan, Xiangjiang (author)
Dixon, Andrew (author)
Li, Shengbin (author)
Li, Ning (author)
Huang, Yinhua (author)
Derryberry, Elizabeth P. (author)
Bertelsen, Mads Frost (author)
Sheldon, Frederick H. (author)
Brumfield, Robb T. (author)
Mello, Claudio V. (author)
Lovell, Peter V. (author)
Wirthlin, Morgan (author)
Cruz Schneider, Maria Paula (author)
Prosdocimi, Francisco (author)
Samaniego, Jose Alfredo (author)
Vargas Velazquez, Amhed Missael (author)
Alfaro-Nunez, Alonzo (author)
Campos, Paula F. (author)
Petersen, Bent (author)
Sicheritz-Ponten, Thomas (author)
Pas, An (author)
Bailey, Tom (author)
Scofield, Paul (author)
Bunce, Michael (author)
Lambert, David M. (author)
Zhou, Qi (author)
Perelman, Polina (author)
Driskell, Amy C. (author)
Shapiro, Beth (author)
Xiong, Zijun (author)
Zeng, Yongli (author)
Liu, Shiping (author)
Li, Zhenyu (author)
Liu, Binghang (author)
Wu, Kui (author)
Xiao, Jin (author)
Yinqi, Xiong (author)
Zheng, Qiuemei (author)
Zhang, Yong (author)
Yang, Huanming (author)
Wang, Jian (author)
Smeds, LinneaUppsala universitet,Evolutionsbiologi(Swepub:uu)linsm456 (author)
Rheindt, Frank E. (author)
Braun, Michael (author)
Fjeldsa, Jon (author)
Orlando, Ludovic (author)
Barker, F. Keith (author)
Jonsson, Knud Andreas (author)
Johnson, Warren (author)
Koepfli, Klaus-Peter (author)
O'Brien, Stephen (author)
Haussler, David (author)
Ryder, Oliver A. (author)
Rahbek, Carsten (author)
Willerslev, Eske (author)
Graves, Gary R. (author)
Glenn, Travis C. (author)
McCormack, John (author)
Burt, Dave (author)
Ellegren, HansUppsala universitet,Evolutionsbiologi(Swepub:uu)hanselle (author)
Alström, PerSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,ARTDATABANKEN,Swedish Species Information Centre,Chinese Academy of Sciences(Swepub:slu)48106 (author)
Edwards, Scott V. (author)
Stamatakis, Alexandros (author)
Mindell, David P. (author)
Cracraft, Joel (author)
Braun, Edward L. (author)
Warnow, Tandy (author)
Jun, Wang (author)
Gilbert, M. Thomas P. (author)
Zhang, Guojie (author)
Uppsala universitetEvolutionsbiologi (creator_code:org_t)
Sveriges lantbruksuniversitet

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In:Science: American Association for the Advancement of Science (AAAS)346:6215, s. 1320-13310036-80751095-9203

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By the author/editor: Jarvis, Erich D.; Mirarab, Siavash; Aberer, Andre J.; Li, Bo; Houde, Peter; Li, Cai; show more...; Ho, Simon Y. W.; Faircloth, Brant ...; Nabholz, Benoit; Howard, Jason T.; Suh, Alexander; Weber, Claudia C ...; da Fonseca, Rute ...; Li, Jianwen; Zhang, Fang; Li, Hui; Zhou, Long; Narula, Nitish; Liu, Liang; Ganapathy, Ganes ...; Boussau, Bastien; Bayzid, Md. Sham ...; Zavidovych, Volo ...; Subramanian, San ...; Gabaldon, Toni; Capella-Gutierre ...; Huerta-Cepas, Ja ...; Rekepalli, Bhanu; Munch, Kasper; Schierup, Mikkel; Lindow, Bent; Warren, Wesley C ...; Ray, David; Green, Richard E ...; Bruford, Michael ...; Zhan, Xiangjiang; Dixon, Andrew; Li, Shengbin; Li, Ning; Huang, Yinhua; Derryberry, Eliz ...; Bertelsen, Mads ...; Sheldon, Frederi ...; Brumfield, Robb ...; Mello, Claudio V ...; Lovell, Peter V.; Wirthlin, Morgan; Cruz Schneider, ...; Prosdocimi, Fran ...; Samaniego, Jose ...; Vargas Velazquez ...; Alfaro-Nunez, Al ...; Campos, Paula F.; Petersen, Bent; Sicheritz-Ponten ...; Pas, An; Bailey, Tom; Scofield, Paul; Bunce, Michael; Lambert, David M ...; Zhou, Qi; Perelman, Polina; Driskell, Amy C.; Shapiro, Beth; Xiong, Zijun; Zeng, Yongli; Liu, Shiping; Li, Zhenyu; Liu, Binghang; Wu, Kui; Xiao, Jin; Yinqi, Xiong; Zheng, Qiuemei; Zhang, Yong; Yang, Huanming; Wang, Jian; Smeds, Linnea; Rheindt, Frank E ...; Braun, Michael; Fjeldsa, Jon; Orlando, Ludovic; Barker, F. Keith; Jonsson, Knud An ...; Johnson, Warren; Koepfli, Klaus-P ...; O'Brien, Stephen; Haussler, David; Ryder, Oliver A.; Rahbek, Carsten; Willerslev, Eske; Graves, Gary R.; Glenn, Travis C.; McCormack, John; Burt, Dave; Ellegren, Hans; Alström, Per; Edwards, Scott V ...; Stamatakis, Alex ...; Mindell, David P ...; Cracraft, Joel; Braun, Edward L.; Warnow, Tandy; Jun, Wang; Gilbert, M. Thom ...; Zhang, Guojie; show less...

About the subject

NATURAL SCIENCES: NATURAL SCIENCES; and Biological Scien ...; and Evolutionary Bio ...

NATURAL SCIENCES: NATURAL SCIENCES; and Biological Scien ...; and Biological Syste ...

NATURAL SCIENCES: NATURAL SCIENCES; and Biological Scien ...; and Ecology

NATURAL SCIENCES: NATURAL SCIENCES; and Biological Scien ...; and Zoology

NATURAL SCIENCES: NATURAL SCIENCES; and Biological Scien ...; and Bioinformatics a ...

NATURAL SCIENCES: NATURAL SCIENCES; and Biological Scien ...; and Genetics

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By the university: Uppsala University; Swedish University of Agricultural Sciences

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