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  • Martínez Barrio, ÁlvaroUppsala universitet,Science for Life Laboratory, SciLifeLab,Molekylär evolution,Institutionen för medicinsk biokemi och mikrobiologi (author)

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

  • Article/chapterEnglish2016

Publisher, publication year, extent ...

  • 2016
  • electronicrdacarrier

Numbers

  • LIBRIS-ID:oai:DiVA.org:uu-279967
  • https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-279967URI
  • https://doi.org/10.7554/eLife.12081DOI
  • https://res.slu.se/id/publ/76939URI
  • https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-136954URI

Supplementary language notes

  • Language:English
  • Summary in:English

Part of subdatabase

Classification

  • Subject category:ref swepub-contenttype
  • Subject category:art swepub-publicationtype

Notes

  • Alvaro Martinez Barrio, Sangeet Lamichhaney, Guangyi Fan and Nima Rafati contributed equally to this work.
  • Ecological adaptation is of major relevance to speciation and sustainable population management, but the underlying genetic factors are typically hard to study in natural populations due to genetic differentiation caused by natural selection being confounded with genetic drift in subdivided populations. Here, we use whole genome population sequencing of Atlantic and Baltic herring to reveal the underlying genetic architecture at an unprecedented detailed resolution for both adaptation to a new niche environment and timing of reproduction. We identify almost 500 independent loci associated with a recent niche expansion from marine (Atlantic Ocean) to brackish waters (Baltic Sea), and more than 100 independent loci showing genetic differentiation between spring- and autumn-spawning populations irrespective of geographic origin. Our results show that both coding and non-coding changes contribute to adaptation. Haplotype blocks, often spanning multiple genes and maintained by selection, are associated with genetic differentiation.

Subject headings and genre

Added entries (persons, corporate bodies, meetings, titles ...)

  • Lamichhaney, Sangeet,1984-Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)sanla975 (author)
  • Fan, GuangyiState Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macau, China; BGI-Shenzhen, Shenzen, China; 5 College of Physics, Qingdao University, Qingdao, China (author)
  • Rafati, NimaUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)nimra236 (author)
  • Pettersson, MatsUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)mapet205 (author)
  • Zhang, HeBGI-Shenzhen, Shenzen, China; College of Physics, Qingdao University, Qingdao, China (author)
  • Dainat, JacquesUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)jacda119 (author)
  • Ekman, DianaStockholms universitet,Institutionen för biokemi och biofysik,Science for Life Laboratory (SciLifeLab)(Swepub:su)dekma (author)
  • Höppner, Marc P.Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)marho567 (author)
  • Jern, PatricUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)patrjern (author)
  • Martin, MarcelStockholms universitet,Institutionen för biokemi och biofysik,Science for Life Laboratory (SciLifeLab)(Swepub:su)marcm (author)
  • Nystedt, BjörnUppsala universitet,Molekylär evolution,Science for Life Laboratory, SciLifeLab(Swepub:uu)bjsal623 (author)
  • Liu, XinBGI-Shenzhen, Shenzen, China (author)
  • Chen, WenbinBGI-Shenzhen, Shenzhen, China (author)
  • Liang, XinmingBGI-Shenzhen, Shenzhen, China (author)
  • Shi, ChengchengBGI-Shenzhen, Shenzhen, China (author)
  • Fu, YuanyuanBGI-Shenzhen, Shenzhen, China (author)
  • Ma, KailongBGI-Shenzhen, Shenzhen, China (author)
  • Zhan, XiaoBGI-Shenzhen, Shenzhen, China (author)
  • Feng, ChungangUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)chufe122 (author)
  • Gustafson, UllaSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för husdjursgenetik (HGEN),Department of Animal Breeding and Genetics(Swepub:slu)48509 (author)
  • Rubin, Carl-JohanUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)carub021 (author)
  • Sällman Almén, MarkusUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)marsa340 (author)
  • Blass, MartinaSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för akvatiska resurser,Department of Aquatic Resources(Swepub:slu)48871 (author)
  • Casini, MicheleSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för akvatiska resurser,Department of Aquatic Resources(Swepub:slu)50882 (author)
  • Folkvord, ArildDepartment of Biology, University of Bergen, Bergen, Norway; Hjort Center of Marine Ecosystem Dynamics, Bergen, Norway; Institute of Marine Research, Bergen, Norway (author)
  • Laikre, LindaStockholms universitet,Zoologiska institutionen(Swepub:su)laikre (author)
  • Ryman, NilsStockholms universitet,Zoologiska institutionen(Swepub:su)ryman (author)
  • Lee, Simon Ming-Yuen LeeState Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao (author)
  • Xu, XunBGI-Shenzhen, Shenzhen, China (author)
  • Andersson, LeifSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab,Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden; Department of Veterinary Integrative Biosciences, Texas A&M University, Texas, United States,Institutionen för husdjursgenetik (HGEN)(Swepub:slu)48730 (author)
  • Uppsala universitetScience for Life Laboratory, SciLifeLab (creator_code:org_t)
  • Sveriges lantbruksuniversitet

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