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Data publication wi...
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Meyer, Peter A.Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.
(author)
Data publication with the structural biology data grid supports live analysis
- Article/chapterEnglish2016
Publisher, publication year, extent ...
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2016-03-07
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Springer Science and Business Media LLC,2016
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electronicrdacarrier
Numbers
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LIBRIS-ID:oai:DiVA.org:uu-283659
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https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-283659URI
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https://doi.org/10.1038/ncomms10882DOI
Supplementary language notes
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Language:English
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Summary in:English
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Classification
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Subject category:ref swepub-contenttype
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Subject category:art swepub-publicationtype
Notes
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Access to experimental X-ray diffraction image data is fundamental for validation and reproduction of macromolecular models and indispensable for development of structural biology processing methods. Here, we established a diffraction data publication and dissemination system, Structural Biology Data Grid (SBDG; data. sbgrid. org), to preserve primary experimental data sets that support scientific publications. Data sets are accessible to researchers through a community driven data grid, which facilitates global data access. Our analysis of a pilot collection of crystallographic data sets demonstrates that the information archived by SBDG is sufficient to reprocess data to statistics that meet or exceed the quality of the original published structures. SBDG has extended its services to the entire community and is used to develop support for other types of biomedical data sets. It is anticipated that access to the experimental data sets will enhance the paradigm shift in the community towards a much more dynamic body of continuously improving data analysis.
Subject headings and genre
Added entries (persons, corporate bodies, meetings, titles ...)
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Socias, StephanieHarvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.
(author)
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Key, JasonHarvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.
(author)
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Ransey, ElizabethHarvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.
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Tjon, Emily C.Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.
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Buschiazzo, AlejandroInst Pasteur Montevideo, Lab Mol & Struct Microbiol, Montevideo 11400, Uruguay.;Inst Pasteur, Dept Biol Struct & Chem, F-75015 Paris, France.
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Lei, MingChinese Acad Sci, Inst Biochem & Cell Biol, Shanghai Inst Biol Sci, Shanghai 200031, Peoples R China.
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Botka, ChrisHarvard Univ, Sch Med, Boston, MA 02115 USA.
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Withrow, JamesCornell Univ, Argonne Natl Lab, NE CAT, Bldg 436E,9700S Cass Ave, Argonne, IL 60439 USA.;Cornell Univ, Argonne Natl Lab, Dept Chem & Chem Biol, Bldg 436E,9700S Cass Ave, Argonne, IL 60439 USA.
(author)
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Neau, DavidCornell Univ, Argonne Natl Lab, NE CAT, Bldg 436E,9700S Cass Ave, Argonne, IL 60439 USA.;Cornell Univ, Argonne Natl Lab, Dept Chem & Chem Biol, Bldg 436E,9700S Cass Ave, Argonne, IL 60439 USA.
(author)
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Rajashankar, KanagalaghattaCornell Univ, Argonne Natl Lab, NE CAT, Bldg 436E,9700S Cass Ave, Argonne, IL 60439 USA.;Cornell Univ, Argonne Natl Lab, Dept Chem & Chem Biol, Bldg 436E,9700S Cass Ave, Argonne, IL 60439 USA.
(author)
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Anderson, Karen S.Yale Univ, Sch Med, Dept Pharmacol, 333 Cedar St, New Haven, CT 06520 USA.;Yale Univ, Sch Med, Dept Mol Biophys & Biochem, 333 Cedar St, New Haven, CT 06520 USA.
(author)
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Baxter, Richard H.Yale Univ, Sch Med, Dept Mol Biophys & Biochem, 333 Cedar St, New Haven, CT 06520 USA.;Yale Univ, Dept Chem, 225 Prospect St, New Haven, CT 06520 USA.
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Blacklow, Stephen C.Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.
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Boggon, Titus J.Yale Univ, Sch Med, Dept Pharmacol, 333 Cedar St, New Haven, CT 06520 USA.;Yale Univ, Sch Med, Dept Mol Biophys & Biochem, 333 Cedar St, New Haven, CT 06520 USA.
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Bonvin, Alexandre M. J. J.Univ Utrecht, Bijvoet Ctr, Fac Sci, NL-3584 CH Utrecht, Netherlands.
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Borek, DominikaUniv Texas SW Med Ctr Dallas, Dept Biophys & Biochem, Dallas, TX 75390 USA.
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Brett, Tom J.Washington Univ, Sch Med, Dept Internal Med, St Louis, MO 63110 USA.
(author)
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Caflisch, AmedeoUniv Zurich, Dept Biochem, CH-8057 Zurich, Switzerland.
(author)
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Chang, Chung-IAcad Sinica, Inst Biol Chem, Taipei 11529, Taiwan.
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Chazin, Walter J.Vanderbilt Univ, Dept Biochem, Struct Biol Ctr, Nashville, TN 37232 USA.;Vanderbilt Univ, Dept Chem, Struct Biol Ctr, Nashville, TN 37232 USA.
(author)
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Corbett, Kevin D.Ludwig Inst Canc Res, San Diego Branch, La Jolla, CA 92093 USA.;Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA.
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Cosgrove, Michael S.SUNY Upstate Med Univ, Dept Biochem & Mol Biol, Syracuse, NY 13210 USA.
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Crosson, SeanUniv Chicago, Dept Biochem & Mol Biol, 920 E 58Th St, Chicago, IL 60637 USA.
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Dhe-Paganon, SiranoDana Farber Canc Inst, Dept Canc Biol, Boston, MA 02115 USA.
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Di Cera, EnricoSt Louis Univ, Sch Med, Edward A Doisy Dept Biochem & Mol Biol, St Louis, MO 63104 USA.
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Drennan, Catherine L.MIT, Dept Chem, Cambridge, MA 02139 USA.;MIT, Dept Biol, Cambridge, MA 02139 USA. MIT, Howard Hughes Med Inst, Cambridge, MA 02139 USA.
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Eck, Michael J.Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.;Dana Farber Canc Inst, Dept Canc Biol, Boston, MA 02115 USA.
(author)
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Eichman, Brandt F.Vanderbilt Univ, Dept Biol, Nashville, TN 37235 USA.;Vanderbilt Univ, Struct Biol Ctr, 221 Kirkland Hall, Nashville, TN 37235 USA.
(author)
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Fan, Qing R.Columbia Univ, Dept Pharmacol, New York, NY 10032 USA.;Columbia Univ, Dept Pathol & Cell Biol, New York, NY 10032 USA.
(author)
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Ferre-D'Amare, Adrian R.NHLBI, Lab RNA Biophys, NIH, Bldg 10, Bethesda, MD 20892 USA.
(author)
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Fromme, J. ChristopherCornell Univ, Dept Mol Biol & Genet, Weill Inst Cell & Mol Biol, Ithaca, NY 14853 USA.
(author)
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Garcia, K. ChristopherStanford Univ, Howard Hughes Med Inst, Sch Med, Stanford, CA 94305 USA.;Stanford Univ, Dept Mol & Cellular Physiol, Sch Med, Stanford, CA 94305 USA.;Stanford Univ, Dept Biol Struct, Sch Med, Stanford, CA 94305 USA.
(author)
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Gaudet, RachelleHarvard Univ, Dept Mol & Cellular Biol, Cambridge, MA 02138 USA.
(author)
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Gong, PengChinese Acad Sci, Key Lab Special Pathogens & Biosafety, Wuhan Inst Virol, Wuhan 430071, Peoples R China.
(author)
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Harrison, Stephen C.Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.;Harvard Univ, Sch Med, Howard Hughes Med Inst, Boston, MA 02115 USA.;Harvard Univ, Mol Med Lab, Boston Childrens Hosp, Sch Med, Boston, MA 02115 USA.
(author)
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Heldwein, Ekaterina E.Tufts Univ, Sch Med, Dept Mol Biol & Microbiol, Boston, MA 02111 USA.
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Jia, ZongchaoQueens Univ, Dept Biomed & Mol Sci, Kingston, ON K7M 3G5, Canada.
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Keenan, Robert J.Univ Chicago, Dept Biochem & Mol Biol, 920 E 58Th St, Chicago, IL 60637 USA.
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Kruse, Andrew C.Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.
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Kvansakul, MarcLa Trobe Univ, Dept Biochem & Genet, Melbourne, Vic, Australia.
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McLellan, Jason S.Geisel Sch Med Dartmouth, Dept Biochem, Hanover, NH 03755 USA.
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Modis, YorgoUniv Cambridge, Dept Med, MRC Lab Mol Biol, Francis Crick Ave, Cambridge CB2 0QH, England.
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Nam, YunsunUniv Texas SW Med Ctr Dallas, Dallas, TX 75390 USA.
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Otwinowski, ZbyszekUniv Texas SW Med Ctr Dallas, Dept Biophys & Biochem, Dallas, TX 75390 USA.
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Pai, Emil F.Univ Toronto, Dept Biochem, Toronto, ON M5S 1A8, Canada.;Univ Toronto, Dept Med Biophys, Toronto, ON M5S 1A8, Canada.;Univ Toronto, Dept Mol Genet, Toronto, ON M5S 1A8, Canada.;Univ Hlth Network, Ontario Canc Inst, Campbell Family Inst Canc Res, Toronto, ON M5G 2M9, Canada.
(author)
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Barbosa Pereira, Pedro JoseUniv Porto, Inst Biol Mol & Celular, P-4150 Oporto, Portugal.;Univ Porto, Inst Invest & Inovacao Saude, P-4150 Oporto, Portugal.
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Petosa, CarloUniv Grenoble Alpes, CNRS, CFA, Inst Biol Struct, F-38027 Grenoble, France.
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Raman, S.Univ Maryland, Dept Pharmaceut Sci, Baltimore, MD 21201 USA.
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Rapoport, Tom A.Harvard Univ, Sch Med, Howard Hughes Med Inst, Boston, MA 02115 USA.;Harvard Univ, Sch Med, Dept Cell Biol, Boston, MA 02115 USA.
(author)
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Roll-Mecak, AntoninaNatl Inst Neurol Disorders & Stroke, Cell Biol & Biophys Unit, Porter Neurosci Res Ctr, Bethesda, MD 20892 USA.;NHLBI, Bethesda, MD 20892 USA.
(author)
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Rosen, Michael K.Univ Texas SW Med Ctr Dallas, Dept Biophys, Dallas, TX 75390 USA.;Univ Texas SW Med Ctr Dallas, Howard Hughes Med Inst, Dallas, TX 75390 USA.
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Rudenko, GabbyUniv Texas Med Branch, Dept Pharmacol & Toxicol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA.
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Schlessinger, JosephYale Univ, Sch Med, Dept Pharmacol, New Haven, CT 06520 USA.
(author)
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Schwartz, Thomas U.MIT, Dept Biol, Cambridge, MA 02139 USA.
(author)
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Shamoo, YousifRice Univ, Dept Biosci, Houston, TX 77005 USA.
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Sondermann, HolgerCornell Univ, Dept Mol Med, Coll Vet Med, Ithaca, NY 14853 USA.
(author)
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Tao, Yizhi J.Rice Univ, Dept Biosci, Houston, TX 77005 USA.
(author)
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Tolia, Niraj H.Washington Univ, Sch Med, Dept Mol Microbiol, St Louis, MO 63110 USA.
(author)
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Tsodikov, Oleg V.Univ Kentucky, Dept Pharmaceut Sci, Coll Pharm, Lexington, KY 40536 USA.
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Westover, Kenneth D.Univ Texas SW Med Ctr Dallas, Dept Biochem, Dallas, TX 75390 USA.;Univ Texas SW Med Ctr Dallas, Dept Radiat Oncol, Dallas, TX 75390 USA.
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Wu, HaoHarvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.;Boston Childrens Hosp, Program Cellular & Mol Med, Boston, MA 02115 USA.
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Foster, IanArgonne Natl Lab, Math & Comp Sci Div, 9700 S Cass Ave, Argonne, IL 60439 USA.;Univ Chicago, Dept Comp Sci, Chicago, IL 60637 USA.
(author)
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Fraser, James S.Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA.
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Maia, Filipe R. N. C.Uppsala universitet,Molekylär biofysik,Lawrence Berkeley Natl Lab, NERSC, Berkeley, CA 94720 USA.(Swepub:uu)fimai103
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Gonen, TamirHoward Hughes Med Inst, Janelia Res Campus, Ashburn, VA 20147 USA.
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Kirchhausen, TomBoston Childrens Hosp, Program Cellular & Mol Med, Boston, MA 02115 USA.;Boston Childrens Hosp, Dept Pediat, Boston, MA 02115 USA.;Harvard Univ, Sch Med, Dept Cell Biol, Boston, MA 02115 USA.;Harvard Univ, Sch Med, Dept Pediat, Boston, MA 02115 USA.
(author)
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Diederichs, KayUniv Konstanz, Dept Biol, D-78457 Constance, Germany.
(author)
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Crosas, MerceHarvard Univ, Inst Quantitat Social Sci, Cambridge, MA 02138 USA.
(author)
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Sliz, PiotrHarvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.
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Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.Inst Pasteur Montevideo, Lab Mol & Struct Microbiol, Montevideo 11400, Uruguay.;Inst Pasteur, Dept Biol Struct & Chem, F-75015 Paris, France.
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In:Nature Communications: Springer Science and Business Media LLC72041-1723
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Meyer, Peter A.
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Socias, Stephani ...
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Key, Jason
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Ransey, Elizabet ...
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Tjon, Emily C.
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Buschiazzo, Alej ...
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Lei, Ming
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Botka, Chris
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Withrow, James
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Neau, David
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Rajashankar, Kan ...
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Anderson, Karen ...
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Baxter, Richard ...
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Blacklow, Stephe ...
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Boggon, Titus J.
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Bonvin, Alexandr ...
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Borek, Dominika
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Brett, Tom J.
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Caflisch, Amedeo
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Chang, Chung-I
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Chazin, Walter J ...
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Corbett, Kevin D ...
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Cosgrove, Michae ...
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Crosson, Sean
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Dhe-Paganon, Sir ...
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Di Cera, Enrico
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Drennan, Catheri ...
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Eck, Michael J.
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Eichman, Brandt ...
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Fan, Qing R.
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Ferre-D'Amare, A ...
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Fromme, J. Chris ...
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Garcia, K. Chris ...
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Gaudet, Rachelle
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Gong, Peng
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Harrison, Stephe ...
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Heldwein, Ekater ...
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Jia, Zongchao
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Keenan, Robert J ...
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Kruse, Andrew C.
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Kvansakul, Marc
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McLellan, Jason ...
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Modis, Yorgo
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Nam, Yunsun
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Otwinowski, Zbys ...
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Pai, Emil F.
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Barbosa Pereira, ...
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Petosa, Carlo
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Raman, S.
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Rapoport, Tom A.
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Roll-Mecak, Anto ...
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Rosen, Michael K ...
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Rudenko, Gabby
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Schlessinger, Jo ...
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Schwartz, Thomas ...
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Shamoo, Yousif
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Sondermann, Holg ...
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Tao, Yizhi J.
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Tolia, Niraj H.
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Tsodikov, Oleg V ...
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Westover, Kennet ...
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Wu, Hao
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Foster, Ian
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Fraser, James S.
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Maia, Filipe R. ...
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Gonen, Tamir
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Kirchhausen, Tom
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Diederichs, Kay
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Crosas, Merce
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Sliz, Piotr
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