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  • Kecheril Sadanandan, SajithUppsala universitet,Avdelningen för visuell information och interaktion,Bildanalys och människa-datorinteraktion,Science for Life Laboratory, SciLifeLab (author)

Automated training of deep convolutional neural networks for cell segmentation

  • Article/chapterEnglish2017

Publisher, publication year, extent ...

  • 2017-08-10
  • Springer Science and Business Media LLC,2017
  • electronicrdacarrier

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  • LIBRIS-ID:oai:DiVA.org:uu-329301
  • https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-329301URI
  • https://doi.org/10.1038/s41598-017-07599-6DOI
  • http://kipublications.ki.se/Default.aspx?queryparsed=id:136396276URI

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  • Language:English
  • Summary in:English

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  • Subject category:ref swepub-contenttype
  • Subject category:art swepub-publicationtype

Notes

  • Deep Convolutional Neural Networks (DCNN) have recently emerged as superior for many image segmentation tasks. The DCNN performance is however heavily dependent on the availability of large amounts of problem-specific training samples. Here we show that DCNNs trained on ground truth created automatically using fluorescently labeled cells, perform similar to manual annotations.

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  • Ranefall, PetterUppsala universitet,Avdelningen för visuell information och interaktion,Bildanalys och människa-datorinteraktion,Science for Life Laboratory, SciLifeLab(Swepub:uu)peran517 (author)
  • Le Guyader, SylvieKarolinska Institutet,Center for Biosciences, Department of Biosciences and Nutrition, Novum, Karolinska Institutet, Huddinge, Sweden (author)
  • Wählby, Carolina,1974-Uppsala universitet,Avdelningen för visuell information och interaktion,Science for Life Laboratory, SciLifeLab,Bildanalys och människa-datorinteraktion(Swepub:uu)cli05194 (author)
  • Uppsala universitetAvdelningen för visuell information och interaktion (creator_code:org_t)

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  • In:Scientific Reports: Springer Science and Business Media LLC72045-2322

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