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Single-cell RNA sequencing of mouse brain and lung vascular and vessel-associated cell types

He, Liqun (author)
Tianjin Med Univ Gen Hosp, Key Lab Postneuroinjury Neurorepair & Regenerat C, Minist Educ & Tianjin City, Dept Neurosurg,Tianjin Neurol Inst, Tianjin 300052, Peoples R China
Vanlandewijck, Michael, 1982- (author)
Uppsala universitet,Vaskulärbiologi,Karolinska Inst, Dept Med Huddinge, Integrated Cardio Metab Ctr, Blickagangen 6, SE-14157 Huddinge, Sweden
Mäe, Maarja Andaloussi (author)
Uppsala universitet,Institutionen för immunologi, genetik och patologi
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Andrae, Johanna (author)
Uppsala universitet,Vaskulärbiologi
Ando, Koji (author)
Uppsala universitet,Vaskulärbiologi
Del Gaudio, Francesca (author)
Karolinska Institutet
Nahar, Khayrun (author)
Uppsala universitet,Vaskulärbiologi
Lebouvier, Thibaud (author)
Uppsala universitet,Institutionen för immunologi, genetik och patologi,Univ Lille, CHU, Memory Ctr, Inserm,U1171,Distalz, F-59000 Lille, France
Lavina, Barbara (author)
Uppsala universitet,Institutionen för immunologi, genetik och patologi
Gouveia, Maria Leonor Seguardo (author)
Uppsala universitet,Vaskulärbiologi
Sun, Ying (author)
Zhongyuan Union Genet Technol Co Ltd, Dept Bioinformat, 45 9th East Rd, Tianjin 300304, Peoples R China
Raschperger, Elisabeth (author)
Karolinska Inst, Dept Med Huddinge, Integrated Cardio Metab Ctr, Blickagangen 6, SE-14157 Huddinge, Sweden
Segerstolpe, Asa (author)
Karolinska Inst, Dept Med Huddinge, Integrated Cardio Metab Ctr, Blickagangen 6, SE-14157 Huddinge, Sweden
Liu, Jianping (author)
Karolinska Inst, Dept Med Huddinge, Integrated Cardio Metab Ctr, Blickagangen 6, SE-14157 Huddinge, Sweden
Gustafsson, Sonja (author)
Karolinska Inst, Dept Med Huddinge, Integrated Cardio Metab Ctr, Blickagangen 6, SE-14157 Huddinge, Sweden
Rasanen, Markus (author)
Univ Helsinki, Wihuri Res Inst, Haartmaninkatu 8,POB 63, FI-00014 Helsinki, Finland;Univ Helsinki, Translat Canc Biol Program, Biomedicum Helsinki, Haartmaninkatu 8,POB 63, FI-00014 Helsinki, Finland
Zarb, Yvette (author)
Zurich Univ, Univ Zurich Hosp, Div Neurosurg, CH-8091 Zurich, Switzerland
Mochizuki, Naoki (author)
Natl Cerebral & Cardiovasc Ctr, Dept Cell Biol, Res Inst, 5-7-1 Fujishirodai, Suita, Osaka 5658565, Japan;Natl Cerebral & Cardiovasc Ctr, AMED CREST, 5-7-1 Fujishirodai, Suita, Osaka 5658565, Japan
Keller, Annika (author)
Zurich Univ, Univ Zurich Hosp, Div Neurosurg, CH-8091 Zurich, Switzerland
Lendahl, Urban (author)
Karolinska Institutet
Betsholtz, Christer (author)
Karolinska Institutet,Uppsala universitet,Vaskulärbiologi,Karolinska Inst, Dept Med Huddinge, Integrated Cardio Metab Ctr, Blickagangen 6, SE-14157 Huddinge, Sweden
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 (creator_code:org_t)
2018-08-21
2018
English.
In: Scientific Data. - : NATURE PUBLISHING GROUP. - 2052-4463. ; 5
Related links:
https://doi.org/10.1...
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https://uu.diva-port... (primary) (Raw object)
https://www.nature.c...
https://urn.kb.se/re...
https://doi.org/10.1...
http://kipublication...
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  • Journal article (peer-reviewed)
Abstract Subject headings
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  • Vascular diseases are major causes of death, yet our understanding of the cellular constituents of blood vessels, including how differences in their gene expression profiles create diversity in vascular structure and function, is limited. In this paper, we describe a single-cell RNA sequencing (scRNA-seq) dataset that defines vascular and vessel-associated cell types and subtypes in mouse brain and lung. The dataset contains 3,436 single cell transcriptomes from mouse brain, which formed 15 distinct clusters corresponding to cell (sub) types, and another 1,504 single cell transcriptomes from mouse lung, which formed 17 cell clusters. In order to allow user-friendly access to our data, we constructed a searchable database (http://betsholtzlab.org/VascularSingleCells/database.html). Our dataset constitutes a comprehensive molecular atlas of vascular and vessel-associated cell types in the mouse brain and lung, and as such provides a strong foundation for future studies of vascular development and diseases.

Subject headings

MEDICIN OCH HÄLSOVETENSKAP  -- Medicinska och farmaceutiska grundvetenskaper -- Cell- och molekylärbiologi (hsv//swe)
MEDICAL AND HEALTH SCIENCES  -- Basic Medicine -- Cell and Molecular Biology (hsv//eng)

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