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The horse Y chromos...
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Felkel, SabineUniv Vet Med Vienna, Inst Anim Breeding & Genet, A-1210 Vienna, Austria;Vienna Grad Sch Populat Genet, Vienna, Austria
(author)
The horse Y chromosome as an informative marker for tracing sire lines
- Article/chapterEnglish2019
Publisher, publication year, extent ...
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2019-04-15
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Springer Science and Business Media LLC,2019
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electronicrdacarrier
Numbers
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LIBRIS-ID:oai:DiVA.org:uu-382849
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https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-382849URI
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https://doi.org/10.1038/s41598-019-42640-wDOI
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https://res.slu.se/id/publ/99924URI
Supplementary language notes
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Language:English
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Summary in:English
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Classification
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Subject category:ref swepub-contenttype
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Subject category:art swepub-publicationtype
Notes
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Analysis of the Y chromosome is the best-established way to reconstruct paternal family history in humans. Here, we applied fine-scaled Y-chromosomal haplotyping in horses with biallelic markers and demonstrate the potential of our approach to address the ancestry of sire lines. We de novo assembled a draft reference of the male-specific region of the Y chromosome from Illumina short reads and then screened 5.8 million basepairs for variants in 130 specimens from intensively selected and rural breeds and nine Przewalski's horses. Among domestic horses we confirmed the predominance of a young'crown haplogroup' in Central European and North American breeds. Within the crown, we distinguished 58 haplotypes based on 211 variants, forming three major haplogroups. In addition to two previously characterised haplogroups, one observed in Arabian/Coldblooded and the other in Turkoman/Thoroughbred horses, we uncovered a third haplogroup containing Iberian lines and a North African Barb Horse. In a genealogical showcase, we distinguished the patrilines of the three English Thoroughbred founder stallions and resolved a historic controversy over the parentage of the horse 'Galopin', born in 1872. We observed two nearly instantaneous radiations in the history of Central and Northern European Y-chromosomal lineages that both occurred after domestication 5,500 years ago.
Subject headings and genre
Added entries (persons, corporate bodies, meetings, titles ...)
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Vogl, ClausUniv Vet Med Vienna, Inst Anim Breeding & Genet, A-1210 Vienna, Austria
(author)
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Rigler, DorisUniv Vet Med Vienna, Inst Anim Breeding & Genet, A-1210 Vienna, Austria
(author)
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Dobretsberger, ViktoriaUniv Vet Med Vienna, Inst Anim Breeding & Genet, A-1210 Vienna, Austria
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Chowdhary, Bhanu P.United Arab Emirates Univ, Al Ain 15551, U Arab Emirates
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Distl, OttmarUniv Vet Med Hannover, Inst Anim Breeding & Genet, D-30559 Hannover, Germany
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Fries, RuediTech Univ Muenchen, Lehrstuhl Tierzucht, D-85354 Freising Weihenstephan, Germany
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Jagannathan, VidhyaUniv Bern, Vetsuisse Fac, Inst Genet, CH-3001 Bern, Switzerland
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Janecka, Jan E.Duquesne Univ, Dept Biol Sci, Pittsburgh, PA 15282 USA
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Leeb, TossoUniv Bern, Vetsuisse Fac, Inst Genet, CH-3001 Bern, Switzerland
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Lindgren, GabriellaSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för husdjursgenetik (HGEN),Department of Animal Breeding and Genetics,University of Leuven (KU Leuven),Swedish Univ Agr Sci, Dept Anim Breeding & Genet, S-75007 Uppsala, Sweden;Katholieke Univ Leuven, Dept Biosyst, B-3001 Leuven, Belgium(Swepub:slu)51014
(author)
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McCue, MollyUniv Minnesota, Vet Populat Med Dept, St Paul, MN 55108 USA
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Metzger, JuliaUniv Vet Med Hannover, Inst Anim Breeding & Genet, D-30559 Hannover, Germany
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Neuditschko, MarkusAgroscope, Swiss Natl Stud Farm, CH-1580 Avenches, Switzerland
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Rattei, ThomasUniv Vienna, Dept Microbiol & Ecosyst Sci, Div Computat Syst Biol, Althanstr 14, A-1090 Vienna, Austria
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Raudsepp, TerjeTexas A&M Univ, Coll Vet Med & Biomed Sci, Dept Vet Integrat Biosci, College Stn, TX 77843 USA
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Rieder, StefanAgroscope, Swiss Natl Stud Farm, CH-1580 Avenches, Switzerland
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Rubin, Carl-JohanUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)carub021
(author)
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Schaefer, RobertAgroscope, Swiss Natl Stud Farm, CH-1580 Avenches, Switzerland
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Schloetterer, ChristianUniv Vet Med Vienna, Inst Populat Genet, A-1210 Vienna, Austria
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Thaller, GeorgUniv Kiel, Inst Anim Breeding & Husb, D-24098 Kiel, Germany
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Tetens, JensUniv Kiel, Inst Anim Breeding & Husb, D-24098 Kiel, Germany;Georg August Univ Gottingen, Dept Anim Sci, Funct Breeding Grp, D-37077 Gottingen, Germany
(author)
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Velie, BrandonSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för husdjursgenetik (HGEN),Department of Animal Breeding and Genetics,University of Sydney,Swedish Univ Agr Sci, Dept Anim Breeding & Genet, S-75007 Uppsala, Sweden;Univ Sydney, Sch Life & Environm Sci, Sydney, NSW 2006, Australia(Swepub:slu)110821
(author)
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Brem, GottfriedUniv Vet Med Vienna, Inst Anim Breeding & Genet, A-1210 Vienna, Austria
(author)
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Wallner, BarbaraUniv Vet Med Vienna, Inst Anim Breeding & Genet, A-1210 Vienna, Austria
(author)
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Univ Vet Med Vienna, Inst Anim Breeding & Genet, A-1210 Vienna, Austria;Vienna Grad Sch Populat Genet, Vienna, AustriaUniv Vet Med Vienna, Inst Anim Breeding & Genet, A-1210 Vienna, Austria
(creator_code:org_t)
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Sveriges lantbruksuniversitet
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In:Scientific Reports: Springer Science and Business Media LLC92045-2322
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- By the author/editor
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Felkel, Sabine
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Vogl, Claus
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Rigler, Doris
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Dobretsberger, V ...
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Chowdhary, Bhanu ...
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Distl, Ottmar
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show more...
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Fries, Ruedi
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Jagannathan, Vid ...
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Janecka, Jan E.
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Leeb, Tosso
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Lindgren, Gabrie ...
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McCue, Molly
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Metzger, Julia
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Neuditschko, Mar ...
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Rattei, Thomas
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Raudsepp, Terje
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Rieder, Stefan
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Rubin, Carl-Joha ...
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Schaefer, Robert
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Schloetterer, Ch ...
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Thaller, Georg
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Tetens, Jens
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Velie, Brandon
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Brem, Gottfried
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Wallner, Barbara
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- About the subject
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- AGRICULTURAL SCIENCES
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AGRICULTURAL SCI ...
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and Agricultural Bio ...
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and Genetics and Bre ...
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- AGRICULTURAL SCIENCES
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AGRICULTURAL SCI ...
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and Animal and Dairy ...
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Uppsala University
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Swedish University of Agricultural Sciences