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Bayesian model and ...
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Tengvall, Katarina,1980-Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab,Kerstin Lindblad-Toh
(author)
Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis
- Article/chapterEnglish2022
Publisher, publication year, extent ...
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2022-12-08
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Springer Nature,2022
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electronicrdacarrier
Numbers
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LIBRIS-ID:oai:DiVA.org:uu-490599
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https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-490599URI
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https://doi.org/10.1038/s42003-022-04279-8DOI
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https://res.slu.se/id/publ/123598URI
Supplementary language notes
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Language:English
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Summary in:English
Part of subdatabase
Classification
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Subject category:ref swepub-contenttype
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Subject category:art swepub-publicationtype
Notes
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Canine atopic dermatitis is an inflammatory skin disease with clinical similarities to human atopic dermatitis. Several dog breeds are at increased risk for developing this disease but previous genetic associations are poorly defined. To identify additional genetic risk factors for canine atopic dermatitis, we here apply a Bayesian mixture model adapted for mapping complex traits and a cross-population extended haplotype test to search for disease-associated loci and selective sweeps in four dog breeds at risk for atopic dermatitis. We define 15 associated loci and eight candidate regions under selection by comparing cases with controls. One associated locus is syntenic to the major genetic risk locus (Filaggrin locus) in human atopic dermatitis. One selection signal in common type Labrador retriever cases positions across the TBC1D1 gene (body weight) and one signal of selection in working type German shepherd controls overlaps the LRP1B gene (brain), near the KYNU gene (psoriasis). In conclusion, we identify candidate genes, including genes belonging to the same biological pathways across multiple loci, with potential relevance to the pathogenesis of canine atopic dermatitis. The results show genetic similarities between dog and human atopic dermatitis, and future across-species genetic comparisons are hereby further motivated.
Subject headings and genre
Added entries (persons, corporate bodies, meetings, titles ...)
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Sundström, ElisabethUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)elsun062
(author)
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Wang, ChaoUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)chawa410
(author)
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Bergvall, KerstinSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för kliniska vetenskaper (KV),Department of Clinical Sciences(Swepub:slu)47499
(author)
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Wallerman, OlaUppsala universitet,Science for Life Laboratory, SciLifeLab,Institutionen för medicinsk biokemi och mikrobiologi(Swepub:uu)olwal516
(author)
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Pederson, EricUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)eripe452
(author)
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Karlsson, ÅsaUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)asaka483
(author)
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Harvey, Naomi D.
(author)
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Blott, Sarah C.
(author)
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Olby, Natasha
(author)
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Olivry, Thierry
(author)
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Brander, GustafUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab,Broad Institute of MIT and Harvard, Cambridge, MA, USA(Swepub:uu)gusbr893
(author)
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Meadows, Jennifer R.S.Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)jenme818
(author)
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Roosje, Petra
(author)
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Leeb, Tosso
(author)
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Hedhammar, ÅkeSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för kliniska vetenskaper (KV),Department of Clinical Sciences(Swepub:slu)49648
(author)
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Andersson, GöranSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för husdjursgenetik (HGEN),Department of Animal Breeding and Genetics(Swepub:slu)50422
(author)
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Lindblad-Toh, KerstinUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab,Broad Institute of MIT and Harvard, Cambridge, MA, USA(Swepub:uu)kerli865
(author)
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Uppsala universitetInstitutionen för medicinsk biokemi och mikrobiologi
(creator_code:org_t)
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Sveriges lantbruksuniversitet
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In:Communications Biology: Springer Nature5:12399-3642
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Tengvall, Katari ...
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Sundström, Elisa ...
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Wang, Chao
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Bergvall, Kersti ...
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Wallerman, Ola
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Pederson, Eric
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Karlsson, Åsa
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Harvey, Naomi D.
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Blott, Sarah C.
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Olby, Natasha
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Olivry, Thierry
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Brander, Gustaf
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Meadows, Jennife ...
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Roosje, Petra
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Leeb, Tosso
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Hedhammar, Åke
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Andersson, Göran
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Lindblad-Toh, Ke ...
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Swedish University of Agricultural Sciences