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Divergent sensory a...
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Bentley, Blair P.Univ Massachusetts, Dept Environm Conservat, Amherst, MA 01003 USA
(författare)
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories
- Artikel/kapitelEngelska2023
Förlag, utgivningsår, omfång ...
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2023-02-07
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Proceedings of the National Academy of Sciences (PNAS),2023
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electronicrdacarrier
Nummerbeteckningar
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LIBRIS-ID:oai:DiVA.org:uu-516225
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https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-516225URI
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https://doi.org/10.1073/pnas.2201076120DOI
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Språk:engelska
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Sammanfattning på:engelska
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Ämneskategori:ref swepub-contenttype
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Ämneskategori:art swepub-publicationtype
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Sea turtles represent an ancient lineage of marine vertebrates that evolved from terrestrial ancestors over 100 Mya. The genomic basis of the unique physiological and ecological traits enabling these species to thrive in diverse marine habitats remains largely unknown. Additionally, many populations have drastically declined due to anthropogenic activities over the past two centuries, and their recovery is a high global conservation priority. We generated and analyzed high-quality reference genomes for the leatherback (Dermochelys coriacea) and green (Chelonia mydas) turtles, representing the two extant sea turtle families. These genomes are highly syntenic and homologous, but localized regions of noncollinearity were associated with higher copy numbers of immune, zinc-finger, and olfactory receptor (OR) genes in green turtles, with ORs related to waterborne odorants greatly expanded in green turtles. Our findings suggest that divergent evolution of these key gene families may underlie immunological and sensory adaptations assisting navigation, occupancy of neritic versus pelagic environments, and diet specialization. Reduced collinearity was especially prevalent in microchromosomes, with greater gene content, heterozygosity, and genetic distances between species, supporting their critical role in vertebrate evolutionary adaptation. Finally, diversity and demographic histories starkly contrasted between species, indicating that leatherback turtles have had a low yet stable effective population size, exhibit extremely low diversity compared with other reptiles, and harbor a higher genetic load compared with green turtles, reinforcing concern over their persistence under future climate scenarios. These genomes provide invaluable resources for advancing our understanding of evolution and conservation best practices in an imperiled vertebrate lineage.
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Biuppslag (personer, institutioner, konferenser, titlar ...)
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Carrasco-Valenzuela, TomasLeibniz Inst Zoo & Wildlife Res, Evolutionary Genet Dept, D-10315 Berlin, Germany.;Berlin Ctr Genom Biodivers Res, D-14195 Berlin, Germany
(författare)
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Ramos, Elisa K. S.Leibniz Inst Zoo & Wildlife Res, Evolutionary Genet Dept, D-10315 Berlin, Germany.;Berlin Ctr Genom Biodivers Res, D-14195 Berlin, Germany.;Univ Estadual Campinas, Dept Genet Evolut Microbiol & Immunol, BR-13083970 Campinas, Brazil
(författare)
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Pawar, HarvinderUniv Pompeu Fabra, Inst Biol Evolut, PRBB, CSIC, Barcelona 08003, Catalonia, Spain
(författare)
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Arantes, Larissa SouzaLeibniz Inst Zoo & Wildlife Res, Evolutionary Genet Dept, D-10315 Berlin, Germany.;Berlin Ctr Genom Biodivers Res, D-14195 Berlin, Germany
(författare)
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Alexander, AlanaUniv Otago, Sch Biomed Sci, Dept Anat, Dunedin 9016, New Zealand
(författare)
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Banerjee, Shreya M.Univ Massachusetts, Dept Environm Conservat, Amherst, MA 01003 USA
(författare)
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Masterson, PatrickNIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20894 USA
(författare)
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Kuhlwilm, MartinUniv Pompeu Fabra, Inst Biol Evolut, PRBB, CSIC, Barcelona 08003, Catalonia, Spain.;Univ Vienna, Dept Evolutionary Anthropol, A-1030 Vienna, Austria
(författare)
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Pippel, MartinMax Planck Inst Mol Cell Biol & Genet, D-01307 Dresden, Germany.;Ctr Syst Biol, D-01307 Dresden, Germany
(författare)
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Mountcastle, JacquelynRockefeller Univ, Vertebrate Genome Lab, New York, NY 10065 USA
(författare)
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Haase, BettinaRockefeller Univ, Vertebrate Genome Lab, New York, NY 10065 USA
(författare)
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Uliano-Silva, MarcelaLeibniz Inst Zoo & Wildlife Res, Evolutionary Genet Dept, D-10315 Berlin, Germany.;Berlin Ctr Genom Biodivers Res, D-14195 Berlin, Germany
(författare)
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Formenti, GiulioRockefeller Univ, Vertebrate Genome Lab, New York, NY 10065 USA.;Rockefeller Univ, Lab Neurogenet Language, New York, NY 10065 USA
(författare)
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Howe, KerstinWellcome Sanger Inst, Tree Life, Cambridge CB10, England
(författare)
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Chow, WilliamWellcome Sanger Inst, Tree Life, Cambridge CB10, England
(författare)
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Tracey, AlanWellcome Sanger Inst, Tree Life, Cambridge CB10, England
(författare)
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Sims, YingWellcome Sanger Inst, Tree Life, Cambridge CB10, England
(författare)
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Pelan, SarahWellcome Sanger Inst, Tree Life, Cambridge CB10, England
(författare)
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Wood, JonathanWellcome Sanger Inst, Tree Life, Cambridge CB10, England
(författare)
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Yetsko, KelseyUniv Florida, Whitney Lab Marine Biosci, St Augustine, FL 32080 USA.;Univ Florida, Sea Turtle Hosp, St Augustine, FL 32080 USA
(författare)
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Perrault, Justin R.Loggerhead Marinelife Ctr, Juno Beach, FL 33408 USA
(författare)
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Stewart, KellyNOAA, Marine Mammal & Turtle Div, Southwest Fisheries Sci Ctr, La Jolla, CA 92037 USA.;Ocean Fdn, Washington, DC 20036 USA
(författare)
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Benson, Scott R.NOAA, Marine Mammal & Turtle Div, Southwest Fisheries Sci Ctr, La Jolla, CA 92037 USA.;Moss Landing Marine Labs, Moss Landing, CA 95039 USA
(författare)
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Levy, YanivUniv Haifa, Leon H Charney Sch Marine Sci, Dept Marine Biol, IL-3498838 Haifa, Israel
(författare)
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V. Todd, EricaDeakin Univ, Sch Life & Environm Sci, Queenscliff, Vic 3225, Australia
(författare)
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Shaffer, H. BradleyUniv Calif Los Angeles, Dept Ecol & Evolutionary Biol, Los Angeles, CA 90095 USA.;Univ Calif Los Angeles, Inst Environm & Sustainabil, La Kretz Ctr Calif Conservat Sci, Los Angeles, CA 90095 USA
(författare)
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Scott, PeterUniv Calif Los Angeles, Dept Ecol & Evolutionary Biol, Los Angeles, CA 90095 USA.;West Texas A&M Univ, Dept Life Earth & Environm Sci, Canyon, TX 79016 USA
(författare)
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Henen, Brian T.Marine Corps Air Ground Combat Ctr, Environm Affairs, Marine Air Ground Task Force & Training Command, Twentynine Palms, CA 92278 USA
(författare)
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Murphy, Robert W.Royal Ontario Museum, Ctr Biodivers, Toronto, ON M5S 2C6, Canada
(författare)
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Mohr, David W.Johns Hopkins Univ, Genet Resources Core Facil, Sch Med, McKusick Nathans Dept Genet Med, Baltimore, MD 21287 USA
(författare)
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Scott, Alan F.Johns Hopkins Univ, Genet Resources Core Facil, Sch Med, McKusick Nathans Dept Genet Med, Baltimore, MD 21287 USA
(författare)
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Duffy, David J.Univ Florida, Whitney Lab Marine Biosci, St Augustine, FL 32080 USA.;Univ Florida, Sea Turtle Hosp, St Augustine, FL 32080 USA.;Univ Florida, Dept Biol, Gainesville, FL 32611 USA
(författare)
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Gemmell, Neil J.Univ Otago, Sch Biomed Sci, Dept Anat, Dunedin 9016, New Zealand
(författare)
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Suh, AlexanderUppsala universitet,Evolutionsbiologi,Science for Life Laboratory, SciLifeLab,Systematisk biologi,Univ East Anglia, Sch Biol Sci, Norwich NR4 7TU, Norfolk, England(Swepub:uu)alesu519
(författare)
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Winkler, SylkeMax Planck Inst Mol Cell Biol & Genet, D-01307 Dresden, Germany.;Rockefeller Univ, Vertebrate Genome Lab, New York, NY 10065 USA
(författare)
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Thibaud-Nissen, FrancoiseNIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20894 USA
(författare)
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Nery, Mariana F.Univ Estadual Campinas, Dept Genet Evolut Microbiol & Immunol, BR-13083970 Campinas, Brazil
(författare)
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Marques-Bonet, TomasBarcelona Inst Sci & Technol BIST, Ctr Genom Regulat, CNAG CRG, Barcelona 08028, Spain.;Inst Catalana Recerca & Estudis Avancats, Barcelona 08010, Catalonia, Spain.;Univ Autonoma Barcelona, Inst Catal Paleontol Miquel Crusafont, Barcelona 08193, Spain
(författare)
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Antunes, AgostinhoUniv Porto, Interdisciplinary Ctr Marine & Environm Res, P-4450208 Porto, Portugal.;Univ Porto, Dept Biol, Fac Sci, P-4169007 Porto, Portugal
(författare)
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Tikochinski, YaronRuppin Acad Ctr, Fac Marine Sci, IL-4025000 Michmoret, Israel
(författare)
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Dutton, Peter H.NOAA, Marine Mammal & Turtle Div, Southwest Fisheries Sci Ctr, La Jolla, CA 92037 USA
(författare)
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Fedrigo, OlivierRockefeller Univ, Vertebrate Genome Lab, New York, NY 10065 USA
(författare)
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Myers, Eugene W.Max Planck Inst Mol Cell Biol & Genet, D-01307 Dresden, Germany.;Ctr Syst Biol, D-01307 Dresden, Germany.;Tech Univ Dresden, Fac Comp Sci, D-01069 Dresden, Germany
(författare)
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Jarvis, Erich D.Rockefeller Univ, Vertebrate Genome Lab, New York, NY 10065 USA.;Rockefeller Univ, Lab Neurogenet Language, New York, NY 10065 USA.;HHMI, Chevy Chase, MD 20815 USA
(författare)
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Mazzoni, Camila J.Leibniz Inst Zoo & Wildlife Res, Evolutionary Genet Dept, D-10315 Berlin, Germany.;Berlin Ctr Genom Biodivers Res, D-14195 Berlin, Germany
(författare)
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Komoroske, Lisa M.Univ Massachusetts, Dept Environm Conservat, Amherst, MA 01003 USA
(författare)
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Univ Massachusetts, Dept Environm Conservat, Amherst, MA 01003 USALeibniz Inst Zoo & Wildlife Res, Evolutionary Genet Dept, D-10315 Berlin, Germany.;Berlin Ctr Genom Biodivers Res, D-14195 Berlin, Germany
(creator_code:org_t)
Sammanhörande titlar
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Ingår i:Proceedings of the National Academy of Sciences of the United States of America: Proceedings of the National Academy of Sciences (PNAS)120:70027-84241091-6490
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Till lärosätets databas
- Av författaren/redakt...
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Bentley, Blair P ...
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Carrasco-Valenzu ...
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Ramos, Elisa K. ...
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Pawar, Harvinder
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Arantes, Larissa ...
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Alexander, Alana
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visa fler...
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Banerjee, Shreya ...
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Masterson, Patri ...
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Kuhlwilm, Martin
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Pippel, Martin
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Mountcastle, Jac ...
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Haase, Bettina
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Uliano-Silva, Ma ...
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Formenti, Giulio
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Howe, Kerstin
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Chow, William
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Tracey, Alan
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Sims, Ying
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Pelan, Sarah
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Wood, Jonathan
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Yetsko, Kelsey
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Perrault, Justin ...
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Stewart, Kelly
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Benson, Scott R.
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Levy, Yaniv
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V. Todd, Erica
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Shaffer, H. Brad ...
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Scott, Peter
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Henen, Brian T.
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Murphy, Robert W ...
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Mohr, David W.
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Scott, Alan F.
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Duffy, David J.
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Gemmell, Neil J.
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Suh, Alexander
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Winkler, Sylke
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Thibaud-Nissen, ...
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Nery, Mariana F.
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Marques-Bonet, T ...
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Antunes, Agostin ...
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Tikochinski, Yar ...
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Dutton, Peter H.
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Fedrigo, Olivier
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Myers, Eugene W.
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Jarvis, Erich D.
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Mazzoni, Camila ...
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Komoroske, Lisa ...
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