Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

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Hillier, Ladeana W (author)

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Article/chapterEnglish2004

Publisher, publication year, extent ...

2004
printrdacarrier

Numbers

LIBRIS-ID:oai:DiVA.org:uu-72653
https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-72653URI

Supplementary language notes

Language:English
Summary in:English

Part of subdatabase

SwePubSwePub

Classification

Subject category:ref swepub-contenttype
Subject category:art swepub-publicationtype

Notes

We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the chicken is a modern descendant of the dinosaurs and the first non-mammalian amniote to have its genome sequenced, the draft sequence of its genome--composed of approximately one billion base pairs of sequence and an estimated 20,000-23,000 genes--provides a new perspective on vertebrate genome evolution, while also improving the annotation of mammalian genomes. For example, the evolutionary distance between chicken and human provides high specificity in detecting functional elements, both non-coding and coding. Notably, many conserved non-coding sequences are far from genes and cannot be assigned to defined functional classes. In coding regions the evolutionary dynamics of protein domains and orthologous groups illustrate processes that distinguish the lineages leading to birds and mammals. The distinctive properties of avian microchromosomes, together with the inferred patterns of conserved synteny, provide additional insights into vertebrate chromosome architecture.

Subject headings and genre

NATURVETENSKAP Biologi Genetik hsv//swe
NATURAL SCIENCES Biological Sciences Genetics hsv//eng
Animals
Avian Proteins/genetics
Chickens/*genetics
Comparative Study
Conserved Sequence/genetics
DNA Transposable Elements/genetics
Evolution; Molecular
Gene Duplication
Genes/genetics
Genome
Genomics
Humans
Long Interspersed Nucleotide Elements/genetics
Multigene Family/genetics
Mutagenesis/genetics
Physical Chromosome Mapping
Pseudogenes/genetics
RNA; Untranslated/genetics
Research Support; Non-U.S. Gov't
Research Support; U.S. Gov't; Non-P.H.S.
Research Support; U.S. Gov't; P.H.S.
Retroviridae/genetics
Sequence Analysis; DNA
Short Interspersed Nucleotide Elements/genetics
Synteny
Vertebrates/genetics
Genetics
Genetik

Added entries (persons, corporate bodies, meetings, titles ...)

Miller, Webb (author)
Birney, Ewan (author)
Warren, Wesley (author)
Hardison, Ross C (author)
Ponting, Chris P (author)
Bork, Peer (author)
Burt, David W (author)
Groenen, Martien A M (author)
Delany, Mary E (author)
Dodgson, Jerry B (author)
Chinwalla, Asif T (author)
Cliften, Paul F (author)
Clifton, Sandra W (author)
Delehaunty, Kimberly D (author)
Fronick, Catrina (author)
Fulton, Robert S (author)
Graves, Tina A (author)
Kremitzki, Colin (author)
Layman, Dan (author)
Magrini, Vincent (author)
McPherson, John D (author)
Miner, Tracie L (author)
Minx, Patrick (author)
Nash, William E (author)
Nhan, Michael N (author)
Nelson, Joanne O (author)
Oddy, Lachlan G (author)
Pohl, Craig S (author)
Randall-Maher, Jennifer (author)
Smith, Scott M (author)
Wallis, John W (author)
Yang, Shiaw-Pyng (author)
Romanov, Michael N (author)
Rondelli, Catherine M (author)
Paton, Bob (author)
Smith, Jacqueline (author)
Morrice, David (author)
Daniels, Laura (author)
Tempest, Helen G (author)
Robertson, Lindsay (author)
Masabanda, Julio S (author)
Griffin, Darren K (author)
Vignal, Alain (author)
Fillon, Valerie (author)
Jacobbson, LinaUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi (author)
Kerje, SusanneUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi(Swepub:uu)suker516 (author)
Andersson, LeifUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi(Swepub:uu)leand227 (author)
Crooijmans, Richard P M (author)
Aerts, Jan (author)
van der Poel, Jan J (author)
Ellegren, HansUppsala universitet,Institutionen för evolution, genomik och systematik,Evolutionsbiologi(Swepub:uu)hanselle (author)
Caldwell, Randolph B (author)
Hubbard, Simon J (author)
Grafham, Darren V (author)
Kierzek, Andrzej M (author)
McLaren, Stuart R (author)
Overton, Ian M (author)
Arakawa, Hiroshi (author)
Beattie, Kevin J (author)
Bezzubov, Yuri (author)
Boardman, Paul E (author)
Bonfield, James K (author)
Croning, Michael D R (author)
Davies, Robert M (author)
Francis, Matthew D (author)
Humphray, Sean J (author)
Scott, Carol E (author)
Taylor, Ruth G (author)
Tickle, Cheryll (author)
Brown, William R A (author)
Rogers, Jane (author)
Buerstedde, Jean-Marie (author)
Wilson, Stuart A (author)
Stubbs, Lisa (author)
Ovcharenko, Ivan (author)
Gordon, Laurie (author)
Lucas, Susan (author)
Miller, Marcia M (author)
Inoko, Hidetoshi (author)
Shiina, Takashi (author)
Kaufman, Jim (author)
Salomonsen, Jan (author)
Skjoedt, Karsten (author)
Wong, Gane Ka-Shu (author)
Wang, Jun (author)
Liu, Bin (author)
Wang, Jian (author)
Yu, Jun (author)
Yang, Huanming (author)
Nefedov, Mikhail (author)
Koriabine, Maxim (author)
Dejong, Pieter J (author)
Goodstadt, Leo (author)
Webber, Caleb (author)
Dickens, Nicholas J (author)
Letunic, Ivica (author)
Suyama, Mikita (author)
Torrents, David (author)
von Mering, Christian (author)
Zdobnov, Evgeny M (author)
Makova, Kateryna (author)
Nekrutenko, Anton (author)
Elnitski, Laura (author)
Eswara, Pallavi (author)
King, David C (author)
Yang, Shan (author)
Tyekucheva, Svitlana (author)
Radakrishnan, Anusha (author)
Harris, Robert S (author)
Chiaromonte, Francesca (author)
Taylor, James (author)
He, Jianbin (author)
Rijnkels, Monique (author)
Griffiths-Jones, Sam (author)
Ureta-Vidal, Abel (author)
Hoffman, Michael M (author)
Severin, Jessica (author)
Searle, Stephen M J (author)
Law, Andy S (author)
Speed, David (author)
Waddington, Dave (author)
Cheng, Ze (author)
Tuzun, Eray (author)
Eichler, Evan (author)
Bao, Zhirong (author)
Flicek, Paul (author)
Shteynberg, David D (author)
Brent, Michael R (author)
Bye, Jacqueline M (author)
Huckle, Elizabeth J (author)
Chatterji, Sourav (author)
Dewey, Colin (author)
Pachter, Lior (author)
Kouranov, Andrei (author)
Mourelatos, Zissimos (author)
Hatzigeorgiou, Artemis G (author)
Paterson, Andrew H (author)
Ivarie, Robert (author)
Brandström, MikaelUppsala universitet,Evolutionsbiologi,Molecular Evolution(Swepub:uu)mikabran (author)
Axelsson, ErikMolecular Evolution(Swepub:uu)eraxe021 (author)
Backström, NiclasUppsala universitet,Evolutionsbiologi,Molecular Evolution(Swepub:uu)nibac839 (author)
Berlin, SofiaUppsala universitet,Evolutionsbiologi,Molecular Evolution (author)
Webster, Matthew TUppsala universitet,Evolutionsbiologi,Molecular Evolution(Swepub:uu)maweb226 (author)
Pourquie, Olivier (author)
Reymond, Alexandre (author)
Ucla, Catherine (author)
Antonarakis, Stylianos E (author)
Long, Manyuan (author)
Emerson, J J (author)
Betrán, Esther (author)
Dupanloup, Isabelle (author)
Kaessmann, Henrik (author)
Hinrichs, Angie S (author)
Bejerano, Gill (author)
Furey, Terrence S (author)
Harte, Rachel A (author)
Raney, Brian (author)
Siepel, AdamUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi (author)
Kent, W James (author)
Haussler, David (author)
Eyras, Eduardo (author)
Castelo, Robert (author)
Abril, Josep F (author)
Castellano, Sergi (author)
Camara, Francisco (author)
Parra, Genis (author)
Guigo, Roderic (author)
Bourque, Guillaume (author)
Tesler, Glenn (author)
Pevzner, Pavel A (author)
Smit, Arian (author)
Fulton, Lucinda A (author)
Mardis, Elaine R (author)
Wilson, Richard K (author)
Uppsala universitetInstitutionen för medicinsk biokemi och mikrobiologi (creator_code:org_t)

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In:Nature432:7018, s. 695-7160028-08361476-4687

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By the author/editor: Hillier, Ladeana ...; Miller, Webb; Birney, Ewan; Warren, Wesley; Hardison, Ross C; Ponting, Chris P; show more...; Bork, Peer; Burt, David W; Groenen, Martien ...; Delany, Mary E; Dodgson, Jerry B; Chinwalla, Asif ...; Cliften, Paul F; Clifton, Sandra ...; Delehaunty, Kimb ...; Fronick, Catrina; Fulton, Robert S; Graves, Tina A; Kremitzki, Colin; Layman, Dan; Magrini, Vincent; McPherson, John ...; Miner, Tracie L; Minx, Patrick; Nash, William E; Nhan, Michael N; Nelson, Joanne O; Oddy, Lachlan G; Pohl, Craig S; Randall-Maher, J ...; Smith, Scott M; Wallis, John W; Yang, Shiaw-Pyng; Romanov, Michael ...; Rondelli, Cather ...; Paton, Bob; Smith, Jacquelin ...; Morrice, David; Daniels, Laura; Tempest, Helen G; Robertson, Linds ...; Masabanda, Julio ...; Griffin, Darren ...; Vignal, Alain; Fillon, Valerie; Jacobbson, Lina; Kerje, Susanne; Andersson, Leif; Crooijmans, Rich ...; Aerts, Jan; van der Poel, Ja ...; Ellegren, Hans; Caldwell, Randol ...; Hubbard, Simon J; Grafham, Darren ...; Kierzek, Andrzej ...; McLaren, Stuart ...; Overton, Ian M; Arakawa, Hiroshi; Beattie, Kevin J; Bezzubov, Yuri; Boardman, Paul E; Bonfield, James ...; Croning, Michael ...; Davies, Robert M; Francis, Matthew ...; Humphray, Sean J; Scott, Carol E; Taylor, Ruth G; Tickle, Cheryll; Brown, William R ...; Rogers, Jane; Buerstedde, Jean ...; Wilson, Stuart A; Stubbs, Lisa; Ovcharenko, Ivan; Gordon, Laurie; Lucas, Susan; Miller, Marcia M; Inoko, Hidetoshi; Shiina, Takashi; Kaufman, Jim; Salomonsen, Jan; Skjoedt, Karsten; Wong, Gane Ka-Sh ...; Wang, Jun; Liu, Bin; Wang, Jian; Yu, Jun; Yang, Huanming; Nefedov, Mikhail; Koriabine, Maxim; Dejong, Pieter J; Goodstadt, Leo; Webber, Caleb; Dickens, Nichola ...; Letunic, Ivica; Suyama, Mikita; Torrents, David; von Mering, Chri ...; Zdobnov, Evgeny ...; Makova, Kateryna; Nekrutenko, Anto ...; Elnitski, Laura; Eswara, Pallavi; King, David C; Yang, Shan; Tyekucheva, Svit ...; Radakrishnan, An ...; Harris, Robert S; Chiaromonte, Fra ...; Taylor, James; He, Jianbin; Rijnkels, Moniqu ...; Griffiths-Jones, ...; Ureta-Vidal, Abe ...; Hoffman, Michael ...; Severin, Jessica; Searle, Stephen ...; Law, Andy S; Speed, David; Waddington, Dave; Cheng, Ze; Tuzun, Eray; Eichler, Evan; Bao, Zhirong; Flicek, Paul; Shteynberg, Davi ...; Brent, Michael R; Bye, Jacqueline ...; Huckle, Elizabet ...; Chatterji, Soura ...; Dewey, Colin; Pachter, Lior; Kouranov, Andrei; Mourelatos, Ziss ...; Hatzigeorgiou, A ...; Paterson, Andrew ...; Ivarie, Robert; Brandström, Mika ...; Axelsson, Erik; Backström, Nicla ...; Berlin, Sofia; Webster, Matthew ...; Pourquie, Olivie ...; Reymond, Alexand ...; Ucla, Catherine; Antonarakis, Sty ...; Long, Manyuan; Emerson, J J; Betrán, Esther; Dupanloup, Isabe ...; Kaessmann, Henri ...; Hinrichs, Angie ...; Bejerano, Gill; Furey, Terrence ...; Harte, Rachel A; Raney, Brian; Siepel, Adam; Kent, W James; Haussler, David; Eyras, Eduardo; Castelo, Robert; Abril, Josep F; Castellano, Serg ...; Camara, Francisc ...; Parra, Genis; Guigo, Roderic; Bourque, Guillau ...; Tesler, Glenn; Pevzner, Pavel A; Smit, Arian; Fulton, Lucinda ...; Mardis, Elaine R; Wilson, Richard ...; show less...

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