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- Schoch, CL (author)
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
- Article/chapterEnglish2012
Publisher, publication year, extent ...
- 2012-03-27
- Proceedings of the National Academy of Sciences,2012
Numbers
- LIBRIS-ID:oai:gup.ub.gu.se/156845
- https://gup.ub.gu.se/publication/156845URI
- https://doi.org/10.1073/pnas.1117018109DOI
Supplementary language notes
- Language:English
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- SwePubSwePub
Classification
Notes
- Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the mitochondrial cytochrome c oxidase subunit 1 used as the animal barcode was excluded as a potential marker, because it is difficult to amplify in fungi, often includes large introns, and can be insufficiently variable. Three subunits from the nuclear ribosomal RNA cistron were compared together with regions of three representative protein-coding genes (largest subunit of RNA polymerase II, second largest subunit of RNA polymerase II, and minichromosome maintenance protein). Although the protein-coding gene regions often had a higher percent of correct identification compared with ribosomal markers, low PCR amplification and sequencing success eliminated them as candidates for a universal fungal barcode. Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter- and intraspecific variation. The nuclear ribosomal large subunit, a popular phylogenetic marker in certain groups, had superior species resolution in some taxonomic groups, such as the early diverging lineages and the ascomycete yeasts, but was otherwise slightly inferior to the ITS. The nuclear ribosomal small subunit has poor species-level resolution in fungi. ITS will be formally proposed for adoption as the primary fungal barcode marker to the Consortium for the Barcode of Life, with the possibility that supplementary barcodes may be developed for particular narrowly circumscribed taxonomic groups.
Subject headings and genre
- MEDICIN OCH HÄLSOVETENSKAP Medicinska och farmaceutiska grundvetenskaper Mikrobiologi inom det medicinska området hsv//swe
- MEDICAL AND HEALTH SCIENCES Basic Medicine Microbiology in the medical area hsv//eng
- NATURVETENSKAP Biologi Biologisk systematik hsv//swe
- NATURAL SCIENCES Biological Sciences Biological Systematics hsv//eng
- NATURVETENSKAP Biologi Mikrobiologi hsv//swe
- NATURAL SCIENCES Biological Sciences Microbiology hsv//eng
- NATURVETENSKAP Biologi Bioinformatik och systembiologi hsv//swe
- NATURAL SCIENCES Biological Sciences Bioinformatics and Systems Biology hsv//eng
- NATURVETENSKAP Biologi Zoologi hsv//swe
- NATURAL SCIENCES Biological Sciences Zoology hsv//eng
- Fungi ; barcoding ; ITS
Added entries (persons, corporate bodies, meetings, titles ...)
- Seifert, KA (author)
- Huhndorf, S (author)
- Robert, Vincent (author)
- Spouge, JL (author)
- Levesque, CA (author)
- Chen, W (author)
- Bolchacova, E (author)
- Voigt, K (author)
- Crous, PW (author)
- Miller, AN (author)
- Wingfield, MJ (author)
- Aime, MC (author)
- An, KD (author)
- Bai, FY (author)
- Barreto, RW (author)
- Begerow, D (author)
- Bergeron, MJ (author)
- Blackwell, M (author)
- Boekhout, T (author)
- Bogale, M (author)
- Boonyuen, N (author)
- Burgaz, AR (author)
- Buyck, B (author)
- Cai, L (author)
- Cai, Q (author)
- Cardinali, G (author)
- Chaverri, P (author)
- Coppins, BJ (author)
- Crespo, A (author)
- Cubas, P (author)
- Cummings, C (author)
- Damm, U (author)
- de Beer, ZW (author)
- de Hoog, GS (author)
- Del-Prado, R (author)
- Dentinger, B (author)
- Diéguez-Uribeondo, J (author)
- Divakar, PK (author)
- Douglas, B (author)
- Dueñas, M (author)
- Duong, TA (author)
- Eberhardt, U (author)
- Edwards, JE (author)
- Elshahed, MS (author)
- Fliegerova, K (author)
- Furtado, M (author)
- García, M (author)
- Ge, ZW (author)
- Griffith, GW (author)
- Griffiths, K (author)
- Groenewald, JZ (author)
- Groenewald, M (author)
- Grube, M (author)
- Gryzenhout, M (author)
- Guo, LD (author)
- Hagen, F (author)
- Hambleton, S (author)
- Hamelin, RC (author)
- Hansen, K (author)
- Harrold, P (author)
- Heller, G (author)
- Herrera, C (author)
- Hirayama, K (author)
- Hirooka, Y (author)
- Ho, HM (author)
- Hoffmann, K (author)
- Hofstetter, V (author)
- Högnabba, F (author)
- Hollingsworth, PM (author)
- Hong, SB (author)
- Hosaka, K (author)
- Houbraken, J (author)
- Hughes, K (author)
- Huhtinen, S (author)
- Hyde, KD (author)
- James, T (author)
- Johnson, EM (author)
- Johnson, JE (author)
- Johnston, PR (author)
- Jones, EB (author)
- Kelly, LJ (author)
- Kirk, PM (author)
- Knapp, DG (author)
- Kõljalg, U (author)
- Kovács, GM (author)
- Kurtzman, CP (author)
- Landvik, S (author)
- Leavitt, SD (author)
- Liggenstoffer, AS (author)
- Liimatainen, K (author)
- Lombard, L (author)
- Luangsa-Ard, JJ (author)
- Lumbsch, HT (author)
- Maganti, H (author)
- Maharachchikumbura, SS (author)
- Martin, MP (author)
- May, TW (author)
- McTaggart, AR (author)
- Methven, AS (author)
- Meyer, W (author)
- Moncalvo, J-M (author)
- Mongkolsamrit, S (author)
- Nagy, LG (author)
- Nilsson, R. Henrik,1976Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences(Swepub:gu)xnihen (author)
- Niskanen, T (author)
- Nyilasi, I (author)
- Okada, G (author)
- Okane, I (author)
- Olariaga, I (author)
- Otte, J (author)
- Papp, T (author)
- Park, D (author)
- Petkovits, T (author)
- Pino-Bodas, R (author)
- Quaedvlieg, W (author)
- Raja, HA (author)
- Redecker, D (author)
- Rintoul, TL (author)
- Ruibal, C (author)
- Sarmiento-Ramírez, JM (author)
- Schmitt, I (author)
- Schüßler, A (author)
- Shearer, C (author)
- Sotome, K (author)
- Stefani, FO (author)
- Stenroos, S (author)
- Stielow, B (author)
- Stockinger, H (author)
- Suetrong, S (author)
- Suh, SO (author)
- Sung, GH (author)
- Suzuki, M (author)
- Tanaka, K (author)
- Tedersoo, L (author)
- Telleria, MT (author)
- Tretter, E (author)
- Untereiner, WA (author)
- Urbina, H (author)
- Vágvölgyi, C (author)
- Vialle, A (author)
- Vu, TD (author)
- Walther, G (author)
- Wang, QM (author)
- Wang, Y (author)
- Weir, BS (author)
- Weiß, M (author)
- White, MM (author)
- Xu, J (author)
- Yahr, R (author)
- Yang, ZL (author)
- Yurkov, A (author)
- Zamora, JC (author)
- Zhang, N (author)
- Zhuang, WY (author)
- Schindel, D (author)
- Göteborgs universitetInstitutionen för biologi och miljövetenskap (creator_code:org_t)
Related titles
- In:Proceedings of the National Academy of Sciences of the United States of America: Proceedings of the National Academy of Sciences109:16, s. 6241-62461091-6490
- In:Proceedings of the National Academy of Sciences: Proceedings of the National Academy of Sciences109:16, s. 6241-62460027-8424
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- Schoch, CL
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- Huhndorf, S
- Robert, Vincent
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