Search: (WFRF:(Otte N.)) srt2:(2010-2014)
> (2012) >
Nuclear ribosomal i...
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
-
Schoch, CL (author)
-
Seifert, KA (author)
-
Huhndorf, S (author)
-
show more...
-
Robert, Vincent (author)
-
Spouge, JL (author)
-
Levesque, CA (author)
-
Chen, W (author)
-
Bolchacova, E (author)
-
Voigt, K (author)
-
Crous, PW (author)
-
Miller, AN (author)
-
Wingfield, MJ (author)
-
Aime, MC (author)
-
An, KD (author)
-
Bai, FY (author)
-
Barreto, RW (author)
-
Begerow, D (author)
-
Bergeron, MJ (author)
-
Blackwell, M (author)
-
Boekhout, T (author)
-
Bogale, M (author)
-
Boonyuen, N (author)
-
Burgaz, AR (author)
-
Buyck, B (author)
-
Cai, L (author)
-
Cai, Q (author)
-
Cardinali, G (author)
-
Chaverri, P (author)
-
Coppins, BJ (author)
-
Crespo, A (author)
-
Cubas, P (author)
-
Cummings, C (author)
-
Damm, U (author)
-
de Beer, ZW (author)
-
de Hoog, GS (author)
-
Del-Prado, R (author)
-
Dentinger, B (author)
-
Diéguez-Uribeondo, J (author)
-
Divakar, PK (author)
-
Douglas, B (author)
-
Dueñas, M (author)
-
Duong, TA (author)
-
Eberhardt, U (author)
-
Edwards, JE (author)
-
Elshahed, MS (author)
-
Fliegerova, K (author)
-
Furtado, M (author)
-
García, M (author)
-
Ge, ZW (author)
-
Griffith, GW (author)
-
Griffiths, K (author)
-
Groenewald, JZ (author)
-
Groenewald, M (author)
-
Grube, M (author)
-
Gryzenhout, M (author)
-
Guo, LD (author)
-
Hagen, F (author)
-
Hambleton, S (author)
-
Hamelin, RC (author)
-
Hansen, K (author)
-
Harrold, P (author)
-
Heller, G (author)
-
Herrera, C (author)
-
Hirayama, K (author)
-
Hirooka, Y (author)
-
Ho, HM (author)
-
Hoffmann, K (author)
-
Hofstetter, V (author)
-
Högnabba, F (author)
-
Hollingsworth, PM (author)
-
Hong, SB (author)
-
Hosaka, K (author)
-
Houbraken, J (author)
-
Hughes, K (author)
-
Huhtinen, S (author)
-
Hyde, KD (author)
-
James, T (author)
-
Johnson, EM (author)
-
Johnson, JE (author)
-
Johnston, PR (author)
-
Jones, EB (author)
-
Kelly, LJ (author)
-
Kirk, PM (author)
-
Knapp, DG (author)
-
Kõljalg, U (author)
-
Kovács, GM (author)
-
Kurtzman, CP (author)
-
Landvik, S (author)
-
Leavitt, SD (author)
-
Liggenstoffer, AS (author)
-
Liimatainen, K (author)
-
Lombard, L (author)
-
Luangsa-Ard, JJ (author)
-
Lumbsch, HT (author)
-
Maganti, H (author)
-
Maharachchikumbura, SS (author)
-
Martin, MP (author)
-
May, TW (author)
-
McTaggart, AR (author)
-
Methven, AS (author)
-
Meyer, W (author)
-
Moncalvo, J-M (author)
-
Mongkolsamrit, S (author)
-
Nagy, LG (author)
-
- Nilsson, R. Henrik, 1976 (author)
- Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences
-
Niskanen, T (author)
-
Nyilasi, I (author)
-
Okada, G (author)
-
Okane, I (author)
-
Olariaga, I (author)
-
Otte, J (author)
-
Papp, T (author)
-
Park, D (author)
-
Petkovits, T (author)
-
Pino-Bodas, R (author)
-
Quaedvlieg, W (author)
-
Raja, HA (author)
-
Redecker, D (author)
-
Rintoul, TL (author)
-
Ruibal, C (author)
-
Sarmiento-Ramírez, JM (author)
-
Schmitt, I (author)
-
Schüßler, A (author)
-
Shearer, C (author)
-
Sotome, K (author)
-
Stefani, FO (author)
-
Stenroos, S (author)
-
Stielow, B (author)
-
Stockinger, H (author)
-
Suetrong, S (author)
-
Suh, SO (author)
-
Sung, GH (author)
-
Suzuki, M (author)
-
Tanaka, K (author)
-
Tedersoo, L (author)
-
Telleria, MT (author)
-
Tretter, E (author)
-
Untereiner, WA (author)
-
Urbina, H (author)
-
Vágvölgyi, C (author)
-
Vialle, A (author)
-
Vu, TD (author)
-
Walther, G (author)
-
Wang, QM (author)
-
Wang, Y (author)
-
Weir, BS (author)
-
Weiß, M (author)
-
White, MM (author)
-
Xu, J (author)
-
Yahr, R (author)
-
Yang, ZL (author)
-
Yurkov, A (author)
-
Zamora, JC (author)
-
Zhang, N (author)
-
Zhuang, WY (author)
-
Schindel, D (author)
-
show less...
-
(creator_code:org_t)
- 2012-03-27
- 2012
- English.
-
In: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 1091-6490. ; 109:16, s. 6241-6246
- Related links:
-
https://www.pnas.org...
-
show more...
-
https://gup.ub.gu.se...
-
https://doi.org/10.1...
-
show less...
Abstract
Subject headings
Close
- Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the mitochondrial cytochrome c oxidase subunit 1 used as the animal barcode was excluded as a potential marker, because it is difficult to amplify in fungi, often includes large introns, and can be insufficiently variable. Three subunits from the nuclear ribosomal RNA cistron were compared together with regions of three representative protein-coding genes (largest subunit of RNA polymerase II, second largest subunit of RNA polymerase II, and minichromosome maintenance protein). Although the protein-coding gene regions often had a higher percent of correct identification compared with ribosomal markers, low PCR amplification and sequencing success eliminated them as candidates for a universal fungal barcode. Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter- and intraspecific variation. The nuclear ribosomal large subunit, a popular phylogenetic marker in certain groups, had superior species resolution in some taxonomic groups, such as the early diverging lineages and the ascomycete yeasts, but was otherwise slightly inferior to the ITS. The nuclear ribosomal small subunit has poor species-level resolution in fungi. ITS will be formally proposed for adoption as the primary fungal barcode marker to the Consortium for the Barcode of Life, with the possibility that supplementary barcodes may be developed for particular narrowly circumscribed taxonomic groups.
Subject headings
- MEDICIN OCH HÄLSOVETENSKAP -- Medicinska och farmaceutiska grundvetenskaper -- Mikrobiologi inom det medicinska området (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Basic Medicine -- Microbiology in the medical area (hsv//eng)
- NATURVETENSKAP -- Biologi -- Biologisk systematik (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Biological Systematics (hsv//eng)
- NATURVETENSKAP -- Biologi -- Mikrobiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Microbiology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Zoologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Zoology (hsv//eng)
Keyword
- Fungi ; barcoding ; ITS
Publication and Content Type
- ref (subject category)
- art (subject category)
Find in a library
To the university's database
- By the author/editor
-
Schoch, CL
-
Seifert, KA
-
Huhndorf, S
-
Robert, Vincent
-
Spouge, JL
-
Levesque, CA
-
show more...
-
Chen, W
-
Bolchacova, E
-
Voigt, K
-
Crous, PW
-
Miller, AN
-
Wingfield, MJ
-
Aime, MC
-
An, KD
-
Bai, FY
-
Barreto, RW
-
Begerow, D
-
Bergeron, MJ
-
Blackwell, M
-
Boekhout, T
-
Bogale, M
-
Boonyuen, N
-
Burgaz, AR
-
Buyck, B
-
Cai, L
-
Cai, Q
-
Cardinali, G
-
Chaverri, P
-
Coppins, BJ
-
Crespo, A
-
Cubas, P
-
Cummings, C
-
Damm, U
-
de Beer, ZW
-
de Hoog, GS
-
Del-Prado, R
-
Dentinger, B
-
Diéguez-Uribeond ...
-
Divakar, PK
-
Douglas, B
-
Dueñas, M
-
Duong, TA
-
Eberhardt, U
-
Edwards, JE
-
Elshahed, MS
-
Fliegerova, K
-
Furtado, M
-
García, M
-
Ge, ZW
-
Griffith, GW
-
Griffiths, K
-
Groenewald, JZ
-
Groenewald, M
-
Grube, M
-
Gryzenhout, M
-
Guo, LD
-
Hagen, F
-
Hambleton, S
-
Hamelin, RC
-
Hansen, K
-
Harrold, P
-
Heller, G
-
Herrera, C
-
Hirayama, K
-
Hirooka, Y
-
Ho, HM
-
Hoffmann, K
-
Hofstetter, V
-
Högnabba, F
-
Hollingsworth, P ...
-
Hong, SB
-
Hosaka, K
-
Houbraken, J
-
Hughes, K
-
Huhtinen, S
-
Hyde, KD
-
James, T
-
Johnson, EM
-
Johnson, JE
-
Johnston, PR
-
Jones, EB
-
Kelly, LJ
-
Kirk, PM
-
Knapp, DG
-
Kõljalg, U
-
Kovács, GM
-
Kurtzman, CP
-
Landvik, S
-
Leavitt, SD
-
Liggenstoffer, A ...
-
Liimatainen, K
-
Lombard, L
-
Luangsa-Ard, JJ
-
Lumbsch, HT
-
Maganti, H
-
Maharachchikumbu ...
-
Martin, MP
-
May, TW
-
McTaggart, AR
-
Methven, AS
-
Meyer, W
-
Moncalvo, J-M
-
Mongkolsamrit, S
-
Nagy, LG
-
Nilsson, R. Henr ...
-
Niskanen, T
-
Nyilasi, I
-
Okada, G
-
Okane, I
-
Olariaga, I
-
Otte, J
-
Papp, T
-
Park, D
-
Petkovits, T
-
Pino-Bodas, R
-
Quaedvlieg, W
-
Raja, HA
-
Redecker, D
-
Rintoul, TL
-
Ruibal, C
-
Sarmiento-Ramíre ...
-
Schmitt, I
-
Schüßler, A
-
Shearer, C
-
Sotome, K
-
Stefani, FO
-
Stenroos, S
-
Stielow, B
-
Stockinger, H
-
Suetrong, S
-
Suh, SO
-
Sung, GH
-
Suzuki, M
-
Tanaka, K
-
Tedersoo, L
-
Telleria, MT
-
Tretter, E
-
Untereiner, WA
-
Urbina, H
-
Vágvölgyi, C
-
Vialle, A
-
Vu, TD
-
Walther, G
-
Wang, QM
-
Wang, Y
-
Weir, BS
-
Weiß, M
-
White, MM
-
Xu, J
-
Yahr, R
-
Yang, ZL
-
Yurkov, A
-
Zamora, JC
-
Zhang, N
-
Zhuang, WY
-
Schindel, D
-
show less...
- About the subject
-
- MEDICAL AND HEALTH SCIENCES
-
MEDICAL AND HEAL ...
-
and Basic Medicine
-
and Microbiology in ...
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Biological Syste ...
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Microbiology
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Bioinformatics a ...
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Zoology
- Articles in the publication
-
Proceedings of t ...
-
Proceedings of t ...
- By the university
-
University of Gothenburg