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Detection of signal...
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Alm Rosenblad, Magnus,1957Gothenburg University,Göteborgs universitet,Institutionen för marina vetenskaper,Department of marine sciences,Univ Gothenburg, Dept Marine Sci, Bioinformat Infrastruct Life Sci, Box 460, SE-40530 Gothenburg, Sweden.
(författare)
Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota)
- Artikel/kapitelEngelska2016
Förlag, utgivningsår, omfång ...
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2016-05-13
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Pensoft Publishers,2016
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electronicrdacarrier
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LIBRIS-ID:oai:gup.ub.gu.se/236529
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https://gup.ub.gu.se/publication/236529URI
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https://doi.org/10.3897/mycokeys.13.8579DOI
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https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-298708URI
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During a routine scan for Signal Recognition Particle (SRP) RNAs in eukaryotic sequences, we surprisingly found in silico evidence in GenBank for a 265-base long SRP RNA sequence in the ITS1 region of a total of 11 fully identified species in three ectomycorrhizal genera of the Basidiomycota (Fungi): Astraeus, Russula, and Lactarius. To rule out sequence artifacts, one specimen from a species indicated to have the SRP RNA-containing ITS region in each of these genera was ordered and re-sequenced. Sequences identical to the corresponding GenBank entries were recovered, or in the case of a non-original but conspecific specimen differed by three bases, showing that these species indeed have an SRP RNA sequence incorporated into their ITS1 region. Other than the ribosomal genes, this is the first known case of non-coding RNAs in the eukaryotic ITS region, and it may assist in the examination of other types of insertions in fungal genomes.
Ämnesord och genrebeteckningar
Biuppslag (personer, institutioner, konferenser, titlar ...)
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Martín, María P.CSIC, RJB, Dept Micol, Plaza Murillo 1, Madrid 28014, Spain.
(författare)
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Tedersoo, LehoUniv Tartu, Inst Ecol & Earth Sci, Ulikooli 18, EE-50090 Tartu, Estonia.
(författare)
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Ryberg, MartinUppsala universitet,Systematisk biologi(Swepub:uu)marry118
(författare)
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Larsson, Ellen,1961Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,Univ Gothenburg, Dept Biol & Environm Sci, Box 463, S-40530 Gothenburg, Sweden.(Swepub:gu)xlaell
(författare)
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Wurzbacher, Christian,1980Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,Univ Gothenburg, Dept Biol & Environm Sci, Box 463, S-40530 Gothenburg, Sweden.(Swepub:gu)xwurch
(författare)
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Abarenkov, KessyUniv Tartu, Nat Hist Museum, Vanemuise 46, EE-51014 Tartu, Estonia.
(författare)
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Nilsson, R. Henrik,1976Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences,Univ Gothenburg, Dept Biol & Environm Sci, Box 463, S-40530 Gothenburg, Sweden.(Swepub:gu)xnihen
(författare)
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Göteborgs universitetInstitutionen för marina vetenskaper
(creator_code:org_t)
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Ingår i:MycoKeys: Pensoft Publishers13, s. 21-331314-40571314-4049
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