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  • Pathan, M.La Trobe Univ, La Trobe Inst Mol Sci, Dept Biochem & Genet, Melbourne, Vic, Australia. (author)

A novel community driven software for functional enrichment analysis of extracellular vesicles data

  • Article/chapterEnglish2017

Publisher, publication year, extent ...

  • 2017-12
  • Wiley,2017

Numbers

  • LIBRIS-ID:oai:gup.ub.gu.se/254900
  • https://gup.ub.gu.se/publication/254900URI
  • https://doi.org/10.1080/20013078.2017.1321455DOI
  • http://kipublications.ki.se/Default.aspx?queryparsed=id:139551456URI
  • https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-327147URI

Supplementary language notes

  • Language:English

Part of subdatabase

Classification

  • Subject category:ref swepub-contenttype
  • Subject category:art swepub-publicationtype

Notes

  • Bioinformatics tools are imperative for the in depth analysis of heterogeneous high-throughput data. Most of the software tools are developed by specific laboratories or groups or companies wherein they are designed to perform the required analysis for the group. However, such software tools may fail to capture "what the community needs in a tool". Here, we describe a novel community-driven approach to build a comprehensive functional enrichment analysis tool. Using the existing FunRich tool as a template, we invited researchers to request additional features and/or changes. Remarkably, with the enthusiastic participation of the community, we were able to implement 90% of the requested features. FunRich enables plugin for extracellular vesicles wherein users can download and analyse data from Vesiclepedia database. By involving researchers early through community needs software development, we believe that comprehensive analysis tools can be developed in various scientific disciplines.

Subject headings and genre

Added entries (persons, corporate bodies, meetings, titles ...)

  • Keerthikumar, S.La Trobe Univ, La Trobe Inst Mol Sci, Dept Biochem & Genet, Melbourne, Vic, Australia. (author)
  • Chisanga, D.La Trobe Univ, Dept Comp Sci & Informat Technol, Melbourne, Vic, Australia. (author)
  • Alessandro, R.Univ Palermo, Dept Biopathol & Med Biotechnol, Palermo, Italy. (author)
  • Ang, C. S.Univ Melbourne, Mol Sci & Biotechnol Inst Bio21, Parkville, Vic, Australia.,Icahn Sch Med Mt Sinai, Cardiovasc Res Ctr, New York, NY 10029 USA.,Cedars Sinai Med Ctr, Dept Surg, Div Canc Biol & Therapeut, Los Angeles, CA 90048 USA.;Cedars Sinai Med Ctr, Dept Biomed Sci, Div Canc Biol & Therapeut, Los Angeles, CA 90048 USA.;Cedars Sinai Med Ctr, Samuel Oschin Comprehens Canc Inst, Dept Pathol & Lab Med, Los Angeles, CA 90048 USA. (author)
  • Askenase, P.Yale Univ, Sch Med, Dept Internal Med, Sect Allergy & Clin Immunol, New Haven, CT 06510 USA. (author)
  • Batagov, A. O.ASTAR, Bioinformat Inst, Singapore, Singapore.,Oslo Univ Hosp, Norwegian Radium Hosp, Inst Canc Res, Dept Mol Cell Biol, Oslo, Norway.;Univ Oslo, Fac Med, Ctr Canc Biomed, Oslo, Norway. (author)
  • Benito-Martin, A.Weill Cornell Med Coll, Drukier Inst Childrens Hlth, Meyer Canc Ctr, Childrens Canc & Blood Fdn Labs,Dept Pediat, New York, NY USA.;Weill Cornell Med Coll, Drukier Inst Childrens Hlth, Meyer Canc Ctr, Childrens Canc & Blood Fdn Labs,Dept Cell & Dev B, New York, NY USA. (author)
  • Camussi, G.Univ Torino, Sch Med, Dept Med Sci, Turin, Italy. (author)
  • Clayton, A.Cardiff Univ, Velindre Canc Ctr, Sch Med, Div Canc & Genet, Cardiff, S Glam, Wales. (author)
  • Collino, F.Univ Torino, Sch Med, Dept Med Sci, Turin, Italy.;Univ Fed Rio de Janeiro, Carlos Chagas Filho Inst Biophys, Rio De Janeiro, Brazil. (author)
  • Di Vizio, D.Cedars Sinai Med Ctr, Dept Surg, Div Canc Biol & Therapeut, Los Angeles, CA 90048 USA.;Cedars Sinai Med Ctr, Dept Biomed Sci, Div Canc Biol & Therapeut, Los Angeles, CA 90048 USA.;Cedars Sinai Med Ctr, Samuel Oschin Comprehens Canc Inst, Dept Pathol & Lab Med, Los Angeles, CA 90048 USA. (author)
  • Falcon-Perez, J.CIBERehd, CIC BioGUNE, Metabol Unit, Exosomes Lab, Bizkaia Technol Pk, Derio 48160, Bikaia, Spain.;IKERBASQUE Res Fdn, Bilbao, Spain. (author)
  • Fonseca, P.Karolinska Institutet,Karolinska Inst, Canc Ctr Karolinska, Dept Oncol Pathol, Stockholm, Sweden.;Karolinska Univ Hosp Solna, Stockholm, Sweden.,La Trobe Univ, La Trobe Inst Mol Sci, Dept Biochem & Genet, Melbourne, Vic, Australia. (author)
  • Fonseka, P. (author)
  • Fontana, S.Univ Palermo, Dept Biopathol & Med Biotechnol, Palermo, Italy. (author)
  • Gho, Y. S.Pohang Univ Sci & Technol, Dept Life Sci, Pohang, South Korea. (author)
  • Hendrix, A.Univ Ghent, Dept Radiat Oncol & Expt Canc Res, Lab Expt Canc Res, Ghent, Belgium. (author)
  • Nolte-'T Hoen, E.Univ Utrecht, Fac Vet Med, Dept Biochem & Cell Biol, Utrecht, Netherlands. (author)
  • Iraci, N.Univ Catania, Dept Biomed & Biotechnol Sci BIOMETEC, Catania, Italy.;Univ Cambridge, Wellcome Trust Med Res Council Stem Cell Inst, Dept Clin Neurosci, Cambridge, England.;Univ Cambridge, Natl Inst Hlth Res, Biomed Res Ctr, Cambridge, England. (author)
  • Kastaniegaard, K.Aalborg Univ, Dept Hlth Sci & Technol, Lab Med Mass Spectrometry, Aalborg, Denmark. (author)
  • Kislinger, T.Princess Margaret Canc Ctr, Toronto, ON, Canada. (author)
  • Kowal, J.PSL Res Univ, Inst Curie, INSERM, U932, Paris, France. (author)
  • Kurochkin, I. V.ASTAR, Bioinformat Inst, Singapore, Singapore. (author)
  • Leonardi, T.Univ Cambridge, Wellcome Trust Med Res Council Stem Cell Inst, Dept Clin Neurosci, Cambridge, England.;Univ Cambridge, Natl Inst Hlth Res, Biomed Res Ctr, Cambridge, England.;European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Cambridge, England. (author)
  • Liang, Y.Icahn Sch Med Mt Sinai, Cardiovasc Res Ctr, New York, NY 10029 USA. (author)
  • Llorente, A.Oslo Univ Hosp, Norwegian Radium Hosp, Inst Canc Res, Dept Mol Cell Biol, Oslo, Norway.;Univ Oslo, Fac Med, Ctr Canc Biomed, Oslo, Norway. (author)
  • Lunavat, Taral RGothenburg University,Göteborgs universitet,Krefting Research Centre,Univ Gothenburg, Sahlgrenska Acad, Inst Med, Krefting Res Ctr, Gothenburg, Sweden. (author)
  • Maji, S. (author)
  • Monteleone, F.Univ Palermo, Dept Biopathol & Med Biotechnol, Palermo, Italy. (author)
  • Overbye, A. (author)
  • Panaretakis, T.Karolinska Institutet,Karolinska Inst, Canc Ctr Karolinska, Dept Oncol Pathol, Stockholm, Sweden.;Karolinska Univ Hosp Solna, Stockholm, Sweden. (author)
  • Patel, T.Mayo Clin, Dept Transplantat, Jacksonville, FL 32224 USA. (author)
  • Peinado, H.Spanish Natl Canc Res Ctr CNIO, Dept Mol Oncol, Microenvironm & Metastasis Grp, Madrid, Spain. (author)
  • Pluchino, S.Univ Cambridge, Wellcome Trust Med Res Council Stem Cell Inst, Dept Clin Neurosci, Cambridge, England.;Univ Cambridge, Natl Inst Hlth Res, Biomed Res Ctr, Cambridge, England. (author)
  • Principe, S.Princess Margaret Canc Ctr, Toronto, ON, Canada. (author)
  • Ronquist, GöranUppsala universitet,Institutionen för medicinska vetenskaper(Swepub:uu)goron367 (author)
  • Royo, F.CIBERehd, CIC BioGUNE, Metabol Unit, Exosomes Lab, Bizkaia Technol Pk, Derio 48160, Bikaia, Spain.;IKERBASQUE Res Fdn, Bilbao, Spain. (author)
  • Sahoo, S. (author)
  • Spinelli, C. (author)
  • Stensballe, A.Aalborg Univ, Dept Hlth Sci & Technol, Lab Med Mass Spectrometry, Aalborg, Denmark. (author)
  • Theory, C.PSL Res Univ, Inst Curie, INSERM, U932, Paris, France. (author)
  • van Herwijnen, M. J. C.Univ Utrecht, Fac Vet Med, Dept Biochem & Cell Biol, Utrecht, Netherlands. (author)
  • Wauben, M.Univ Utrecht, Fac Vet Med, Dept Biochem & Cell Biol, Utrecht, Netherlands. (author)
  • Welton, J. L.Cardiff Metropolitan Univ, Cardiff Sch Hlth Sci, Dept Biomed Sci, Cardiff, S Glam, Wales. (author)
  • Zhao, K.La Trobe Univ, La Trobe Inst Mol Sci, Dept Biochem & Genet, Melbourne, Vic, Australia. (author)
  • Mathivanan, S.La Trobe Univ, La Trobe Inst Mol Sci, Dept Biochem & Genet, Melbourne, Vic, Australia. (author)
  • La Trobe Univ, La Trobe Inst Mol Sci, Dept Biochem & Genet, Melbourne, Vic, Australia.La Trobe Univ, Dept Comp Sci & Informat Technol, Melbourne, Vic, Australia. (creator_code:org_t)

Related titles

  • In:Journal of Extracellular Vesicles: Wiley6:12001-3078

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