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Structure and funct...
Structure and function of the global topsoil microbiome
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- Bahram, Mohammad (author)
- Uppsala University,Uppsala universitet,Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för ekologi,Department of Ecology,Systematisk biologi,University of Tartu
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- Hildebrand, F. (author)
- European Molecular Biology Laboratory Heidelberg
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- Forslund, S. K. (author)
- Max Delbrück Center for Molecular Medicine (MDC),European Molecular Biology Laboratory Heidelberg
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- Anderson, Jennifer L (author)
- Uppsala University,Uppsala universitet,Systematisk biologi,University of Tartu
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- Soudzilovskaia, N. A. (author)
- Leiden University
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- Bodegom, P. M. (author)
- Leiden University,University of Tartu
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- Bengtsson-Palme, Johan, 1985 (author)
- University of Gothenburg,Gothenburg University,Göteborgs universitet,CARe - Centrum för antibiotikaresistensforskning,Institutionen för biomedicin, avdelningen för infektionssjukdomar,Centre for antibiotic resistance research, CARe,Institute of Biomedicine, Department of Infectious Medicine
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- Anslan, S. (author)
- University of Tartu,Technical University of Braunschweig
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- Coelho, L. P. (author)
- European Molecular Biology Laboratory Heidelberg
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- Harend, H. (author)
- University of Tartu,Wageningen University
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- Huerta-Cepas, J. (author)
- European Molecular Biology Laboratory Heidelberg
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Medema, M. H. (author)
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- Ryberg, Martin (author)
- Uppsala University,Uppsala universitet,Systematisk biologi
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- Mundra, S. (author)
- University of Oslo
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- Olsson, Pål Axel (author)
- Lund University,Lunds universitet,Biodiversitet,Biologiska institutionen,Naturvetenskapliga fakulteten,Biodiversity,Department of Biology,Faculty of Science
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Pent, M. (author)
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- Polme, S. (author)
- University of Tartu
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Sunagawa, S. (author)
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- Ryberg, M. (author)
- University of California, Riverside
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Tedersoo, L. (author)
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- Bork, P. (author)
- European Molecular Biology Laboratory Heidelberg,Max Delbrück Center for Molecular Medicine (MDC),Julius Maximilian University of Würzburg
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(creator_code:org_t)
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- 2018-08-01
- 2018
- English.
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In: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 560:7717, s. 233-7
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Abstract
Subject headings
Close
- Soils harbour some of the most diverse microbiomes on Earth and are essential for both nutrient cycling and carbon storage. To understand soil functioning, it is necessary to model the global distribution patterns and functional gene repertoires of soil microorganisms, as well as the biotic and environmental associations between the diversity and structure of both bacterial and fungal soil communities(1-4). Here we show, by leveraging metagenomics and metabarcoding of global topsoil samples (189 sites, 7,560 subsamples), that bacterial, but not fungal, genetic diversity is highest in temperate habitats and that microbial gene composition varies more strongly with environmental variables than with geographic distance. We demonstrate that fungi and bacteria show global niche differentiation that is associated with contrasting diversity responses to precipitation and soil pH. Furthermore, we provide evidence for strong bacterial-fungal antagonism, inferred from antibiotic-resistance genes, in topsoil and ocean habitats, indicating the substantial role of biotic interactions in shaping microbial communities. Our results suggest that both competition and environmental filtering affect the abundance, composition and encoded gene functions of bacterial and fungal communities, indicating that the relative contributions of these microorganisms to global nutrient cycling varies spatially.
Subject headings
- NATURVETENSKAP -- Biologi -- Mikrobiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Microbiology (hsv//eng)
- LANTBRUKSVETENSKAPER -- Lantbruksvetenskap, skogsbruk och fiske -- Markvetenskap (hsv//swe)
- AGRICULTURAL SCIENCES -- Agriculture, Forestry and Fisheries -- Soil Science (hsv//eng)
- NATURVETENSKAP -- Biologi -- Evolutionsbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Evolutionary Biology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Ekologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Ecology (hsv//eng)
- NATURVETENSKAP -- Geovetenskap och miljövetenskap -- Miljövetenskap (hsv//swe)
- NATURAL SCIENCES -- Earth and Related Environmental Sciences -- Environmental Sciences (hsv//eng)
Keyword
- read alignment
- soil
- bacterial
- fungal
- diversity
- communities
- sequences
- accurate
- biodiversity
- biogeography
Publication and Content Type
- ref (subject category)
- art (subject category)
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Nature
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To the university's database
- By the author/editor
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Bahram, Mohammad
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Hildebrand, F.
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Forslund, S. K.
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Anderson, Jennif ...
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Soudzilovskaia, ...
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Bodegom, P. M.
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show more...
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Bengtsson-Palme, ...
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Anslan, S.
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Coelho, L. P.
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Harend, H.
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Huerta-Cepas, J.
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Medema, M. H.
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Ryberg, Martin
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Mundra, S.
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Olsson, Pål Axel
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Pent, M.
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Polme, S.
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Sunagawa, S.
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Ryberg, M.
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Tedersoo, L.
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Bork, P.
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show less...
- About the subject
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Microbiology
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- AGRICULTURAL SCIENCES
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AGRICULTURAL SCI ...
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and Agriculture Fore ...
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and Soil Science
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Evolutionary Bio ...
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Ecology
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Earth and Relate ...
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and Environmental Sc ...
- Articles in the publication
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Nature
- By the university
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University of Gothenburg
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Swedish University of Agricultural Sciences
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Uppsala University
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Lund University