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  • Nilsson, R. Henrik,1976Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences (author)

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications.

  • Article/chapterEnglish2019

Publisher, publication year, extent ...

  • 2018-10-29
  • Oxford University Press (OUP),2019

Numbers

  • LIBRIS-ID:oai:gup.ub.gu.se/272237
  • https://gup.ub.gu.se/publication/272237URI
  • https://doi.org/10.1093/nar/gky1022DOI

Supplementary language notes

  • Language:English

Part of subdatabase

Classification

  • Subject category:ref swepub-contenttype
  • Subject category:art swepub-publicationtype

Notes

  • UNITE (https://unite.ut.ee/) is a web-based database and sequence management environment for the molecular identification of fungi. It targets the formal fungal barcode-the nuclear ribosomal internal transcribed spacer(ITS) region-and offers all ∼1 000000 public fungal ITS sequences for reference. These are clustered into ∼459000 species hypotheses and assigned digital object identifiers (DOIs) to promote unambiguous reference across studies. In-house and web-based third-party sequence curation and annotation have resulted in more than 275000 improvements to the data over the past 15 years. UNITE serves as a data provider for a range of metabarcoding software pipelines and regularly exchanges data with all major fungal sequence databases and other community resources. Recent improvements include redesigned handling of unclassifiable species hypotheses, integration with the taxonomic backbone of the Global Biodiversity Information Facility, and support for an unlimited number of parallel taxonomic classification systems.

Subject headings and genre

Added entries (persons, corporate bodies, meetings, titles ...)

  • Larsson, Karl-Henrik (author)
  • Taylor, Andy F S (author)
  • Bengtsson-Palme, Johan,1985Gothenburg University,Göteborgs universitet,CARe - Centrum för antibiotikaresistensforskning,Institutionen för biomedicin, avdelningen för infektionssjukdomar,Centre for antibiotic resistance research, CARe,Institute of Biomedicine, Department of Infectious Medicine(Swepub:gu)xbengg (author)
  • Jeppesen, Thomas S (author)
  • Schigel, Dmitry (author)
  • Kennedy, Peter (author)
  • Picard, Kathryn (author)
  • Glöckner, Frank Oliver (author)
  • Tedersoo, Leho (author)
  • Saar, Irja (author)
  • Kõljalg, Urmas (author)
  • Abarenkov, Kessy (author)
  • Göteborgs universitetInstitutionen för biologi och miljövetenskap (creator_code:org_t)

Related titles

  • In:Nucleic acids research: Oxford University Press (OUP)47:D11362-49620305-1048

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