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- Nilsson, R. Henrik,1976Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences (author)
Mycobiome diversity: high-throughput sequencing and identification of fungi.
- Article/chapterEnglish2019
Publisher, publication year, extent ...
- 2018-11-15
- Springer Science and Business Media LLC,2019
Numbers
- LIBRIS-ID:oai:gup.ub.gu.se/272938
- https://gup.ub.gu.se/publication/272938URI
- https://doi.org/10.1038/s41579-018-0116-yDOI
- https://res.slu.se/id/publ/98104URI
Supplementary language notes
- Language:English
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Notes
- Fungi are major ecological players in both terrestrial and aquatic environments by cycling organic matter and channelling nutrients across trophic levels. High-throughput sequencing (HTS) studies of fungal communities are redrawing the map of the fungal kingdom by hinting at its enormous - and largely uncharted - taxonomic and functional diversity. However, HTS approaches come with a range of pitfalls and potential biases, cautioning against unwary application and interpretation of HTS technologies and results. In this Review, we provide an overview and practical recommendations for aspects of HTS studies ranging from sampling and laboratory practices to data processing and analysis. We also discuss upcoming trends and techniques in the field and summarize recent and noteworthy results from HTS studies targeting fungal communities and guilds. Our Review highlights the need for reproducibility and public data availability in the study of fungal communities. If the associated challenges and conceptual barriers are overcome, HTS offers immense possibilities in mycology and elsewhere.
Subject headings and genre
- NATURVETENSKAP Data- och informationsvetenskap Bioinformatik hsv//swe
- NATURAL SCIENCES Computer and Information Sciences Bioinformatics hsv//eng
- NATURVETENSKAP Geovetenskap och miljövetenskap Klimatforskning hsv//swe
- NATURAL SCIENCES Earth and Related Environmental Sciences Climate Research hsv//eng
- NATURVETENSKAP Biologi Evolutionsbiologi hsv//swe
- NATURAL SCIENCES Biological Sciences Evolutionary Biology hsv//eng
- NATURVETENSKAP Biologi Annan biologi hsv//swe
- NATURAL SCIENCES Biological Sciences Other Biological Topics hsv//eng
- NATURVETENSKAP Biologi Botanik hsv//swe
- NATURAL SCIENCES Biological Sciences Botany hsv//eng
- NATURVETENSKAP Biologi Ekologi hsv//swe
- NATURAL SCIENCES Biological Sciences Ecology hsv//eng
- NATURVETENSKAP Biologi Genetik hsv//swe
- NATURAL SCIENCES Biological Sciences Genetics hsv//eng
- MEDICIN OCH HÄLSOVETENSKAP Medicinska och farmaceutiska grundvetenskaper Mikrobiologi inom det medicinska området hsv//swe
- MEDICAL AND HEALTH SCIENCES Basic Medicine Microbiology in the medical area hsv//eng
- NATURVETENSKAP Geovetenskap och miljövetenskap Oceanografi, hydrologi och vattenresurser hsv//swe
- NATURAL SCIENCES Earth and Related Environmental Sciences Oceanography, Hydrology and Water Resources hsv//eng
- NATURVETENSKAP Biologi Biologisk systematik hsv//swe
- NATURAL SCIENCES Biological Sciences Biological Systematics hsv//eng
- LANTBRUKSVETENSKAPER Lantbruksvetenskap, skogsbruk och fiske hsv//swe
- AGRICULTURAL SCIENCES Agriculture, Forestry and Fisheries hsv//eng
- NATURVETENSKAP Data- och informationsvetenskap Programvaruteknik hsv//swe
- NATURAL SCIENCES Computer and Information Sciences Software Engineering hsv//eng
- TEKNIK OCH TEKNOLOGIER Nanoteknik hsv//swe
- ENGINEERING AND TECHNOLOGY Nano-technology hsv//eng
- NATURVETENSKAP Biologi Zoologi hsv//swe
- NATURAL SCIENCES Biological Sciences Zoology hsv//eng
- LANTBRUKSVETENSKAPER Veterinärmedicin hsv//swe
- AGRICULTURAL SCIENCES Veterinary Science hsv//eng
- NATURVETENSKAP Data- och informationsvetenskap Datavetenskap hsv//swe
- NATURAL SCIENCES Computer and Information Sciences Computer Sciences hsv//eng
- NATURVETENSKAP Biologi Mikrobiologi hsv//swe
- NATURAL SCIENCES Biological Sciences Microbiology hsv//eng
- NATURVETENSKAP Geovetenskap och miljövetenskap Miljövetenskap hsv//swe
- NATURAL SCIENCES Earth and Related Environmental Sciences Environmental Sciences hsv//eng
- NATURVETENSKAP Biologi Bioinformatik och systembiologi hsv//swe
- NATURAL SCIENCES Biological Sciences Bioinformatics and Systems Biology hsv//eng
- Fungi ; ecology ; nutrient cycling ; climate change ; systematics ; high-throughput sequencing ; review
Added entries (persons, corporate bodies, meetings, titles ...)
- Anslan, Sten (author)
- Bahram, MohammadSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för ekologi,Department of Ecology (author)
- Wurzbacher, Christian,1980 (author)
- Baldrian, Petr (author)
- Tedersoo, Leho (author)
- Göteborgs universitetInstitutionen för biologi och miljövetenskap (creator_code:org_t)
- Sveriges lantbruksuniversitet
Related titles
- In:Nature reviews. Microbiology: Springer Science and Business Media LLC17, s. 95-1091740-15341740-1526
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