Setting a baseline for global urban virome surveillance in sewage

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Nieuwenhuijse, David F. (author)

Setting a baseline for global urban virome surveillance in sewage

Article/chapterEnglish2020

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2020-08-13
Springer Science and Business Media LLC,2020

Numbers

LIBRIS-ID:oai:gup.ub.gu.se/299209
https://gup.ub.gu.se/publication/299209URI
https://doi.org/10.1038/s41598-020-69869-0DOI
https://res.slu.se/id/publ/107145URI

Supplementary language notes

Language:English

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SwePubSwePub

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Subject category:ref swepub-contenttype
Subject category:art swepub-publicationtype

Notes

© 2020, The Author(s). The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective.

Subject headings and genre

TEKNIK OCH TEKNOLOGIER Industriell bioteknik hsv//swe
ENGINEERING AND TECHNOLOGY Industrial Biotechnology hsv//eng
NATURVETENSKAP Biologi hsv//swe
NATURAL SCIENCES Biological Sciences hsv//eng
MEDICIN OCH HÄLSOVETENSKAP Medicinsk bioteknologi hsv//swe
MEDICAL AND HEALTH SCIENCES Medical Biotechnology hsv//eng
MEDICIN OCH HÄLSOVETENSKAP Hälsovetenskap Folkhälsovetenskap, global hälsa, socialmedicin och epidemiologi hsv//swe
MEDICAL AND HEALTH SCIENCES Health Sciences Public Health, Global Health, Social Medicine and Epidemiology hsv//eng

Added entries (persons, corporate bodies, meetings, titles ...)

Oude Munnink, Bas B. (author)
Phan, My V.T. (author)
Hendriksen, Rene S. (author)
Bego, Artan (author)
Rees, Catherine (author)
Neilson, Elizabeth Heather (author)
Coventry, Kris (author)
Collignon, Peter (author)
Allerberger, Franz (author)
Rahube, Teddie O. (author)
Oliveira, Guilherme (author)
Ivanov, Ivan (author)
Sopheak, Thet (author)
Vuthy, Yith (author)
Yost, Christopher K. (author)
Tabo, Djim adjim (author)
Cuadros-Orellana, Sara (author)
Ke, Changwen (author)
Zheng, Huanying (author)
Baisheng, Li (author)
Jiao, Xiaoyang (author)
Donado-Godoy, Pilar (author)
Coulibaly, Kalpy Julien (author)
Hrenovic, Jasna (author)
Jergović, Matijana (author)
Karpíšková, Renáta (author)
Elsborg, Bodil (author)
Legesse, Mengistu (author)
Eguale, Tadesse (author)
Heikinheimo, Annamari (author)
Villacis, Jose Eduardo (author)
Sanneh, Bakary (author)
Malania, Lile (author)
Nitsche, Andreas (author)
Brinkmann, Annika (author)
Saba, Courage Kosi Setsoafia (author)
Kocsis, Bela (author)
Solymosi, Norbert (author)
Thorsteinsdottir, Thorunn R. (author)
Hatha, Abdulla Mohamed (author)
Alebouyeh, Masoud (author)
Morris, Dearbhaile (author)
O’Connor, Louise (author)
Cormican, Martin (author)
Moran-Gilad, Jacob (author)
Battisti, Antonio (author)
Alba, Patricia (author)
Shakenova, Zeinegul (author)
Kiiyukia, Ciira (author)
Ng’eno, Eric (author)
Raka, Lul (author)
Bērziņš, Aivars (author)
Avsejenko, Jeļena (author)
Bartkevics, Vadims (author)
Penny, Christian (author)
Rajandas, Heraa (author)
Parimannan, Sivachandran (author)
Haber, Malcolm Vella (author)
Pal, Pushkar (author)
Schmitt, Heike (author)
van Passel, Mark (author)
van de Schans, Milou G.M. (author)
Zuidema, Tina (author)
Jeunen, Gert Jan (author)
Gemmell, Neil (author)
Fashae, Kayode (author)
Wester, Astrid Louise (author)
Holmstad, Rune (author)
Hasan, Rumina (author)
Shakoor, Sadia (author)
Rojas, Maria Luz Zamudio (author)
Wasyl, Dariusz (author)
Bosevska, Golubinka (author)
Kochubovski, Mihail (author)
Radu, Cojocaru (author)
Gassama†, Amy (author)
Radosavljevic, Vladimir (author)
Tay, Moon Y.F. (author)
Zuniga-Montanez, Rogelio (author)
Wuertz, Stefan (author)
Larsson, D. G. Joakim,1969Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för infektionssjukdomar,Institute of Biomedicine, Department of Infectious Medicine(Swepub:gu)xlarjo (author)
Trkov, Marija (author)
Keddy, Karen (author)
Esterhuyse, Kerneels (author)
Cerdà-Cuéllar, Marta (author)
Pathirage, Sujatha (author)
Larsson, D. G. Joakim,1969Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för infektionssjukdomar,Institute of Biomedicine, Department of Infectious Medicine(Swepub:gu)xlarjo (author)
Norrgren, LeifSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Inst för biomedicin och veterinär folkhälsovetenskap,Department of Biomedical Science and Veterinary Public Health(Swepub:slu)46790 (author)
Örn, StefanSwedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Inst för biomedicin och veterinär folkhälsovetenskap,Department of Biomedical Science and Veterinary Public Health(Swepub:slu)48782 (author)
Van der Heijden, Tanja (author)
Kumburu, Happiness Houka (author)
de RodaHusman, Ana Maria (author)
Njanpop-Lafourcade, Berthe Marie (author)
Bidjada, Pawou (author)
Nikiema-Pessinaba, Somtinda Christelle (author)
Levent, Belkis (author)
Meschke, John Scott (author)
Beck, Nicola Koren (author)
Van Dang, Chinh (author)
Göteborgs universitetInstitutionen för biomedicin, avdelningen för infektionssjukdomar (creator_code:org_t)
Sveriges lantbruksuniversitet

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By the author/editor: Nieuwenhuijse, D ...; Oude Munnink, Ba ...; Phan, My V.T.; Hendriksen, Rene ...; Bego, Artan; Rees, Catherine; show more...; Neilson, Elizabe ...; Coventry, Kris; Collignon, Peter; Allerberger, Fra ...; Rahube, Teddie O ...; Oliveira, Guilhe ...; Ivanov, Ivan; Sopheak, Thet; Vuthy, Yith; Yost, Christophe ...; Tabo, Djim adjim; Cuadros-Orellana ...; Ke, Changwen; Zheng, Huanying; Baisheng, Li; Jiao, Xiaoyang; Donado-Godoy, Pi ...; Coulibaly, Kalpy ...; Hrenovic, Jasna; Jergović, Matija ...; Karpíšková, Rená ...; Elsborg, Bodil; Legesse, Mengist ...; Eguale, Tadesse; Heikinheimo, Ann ...; Villacis, Jose E ...; Sanneh, Bakary; Malania, Lile; Nitsche, Andreas; Brinkmann, Annik ...; Saba, Courage Ko ...; Kocsis, Bela; Solymosi, Norber ...; Thorsteinsdottir ...; Hatha, Abdulla M ...; Alebouyeh, Masou ...; Morris, Dearbhai ...; O’Connor, Louise; Cormican, Martin; Moran-Gilad, Jac ...; Battisti, Antoni ...; Alba, Patricia; Shakenova, Zeine ...; Kiiyukia, Ciira; Ng’eno, Eric; Raka, Lul; Bērziņš, Aivars; Avsejenko, Jeļen ...; Bartkevics, Vadi ...; Penny, Christian; Rajandas, Heraa; Parimannan, Siva ...; Haber, Malcolm V ...; Pal, Pushkar; Schmitt, Heike; van Passel, Mark; van de Schans, M ...; Zuidema, Tina; Jeunen, Gert Jan; Gemmell, Neil; Fashae, Kayode; Wester, Astrid L ...; Holmstad, Rune; Hasan, Rumina; Shakoor, Sadia; Rojas, Maria Luz ...; Wasyl, Dariusz; Bosevska, Golubi ...; Kochubovski, Mih ...; Radu, Cojocaru; Gassama†, Amy; Radosavljevic, V ...; Tay, Moon Y.F.; Zuniga-Montanez, ...; Wuertz, Stefan; Larsson, D. G. J ...; Trkov, Marija; Keddy, Karen; Esterhuyse, Kern ...; Cerdà-Cuéllar, M ...; Pathirage, Sujat ...; Norrgren, Leif; Örn, Stefan; Van der Heijden, ...; Kumburu, Happine ...; de RodaHusman, A ...; Njanpop-Lafourca ...; Bidjada, Pawou; Nikiema-Pessinab ...; Levent, Belkis; Meschke, John Sc ...; Beck, Nicola Kor ...; Van Dang, Chinh; show less...

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ENGINEERING AND TECHNOLOGY: ENGINEERING AND ...; and Industrial Biote ...

NATURAL SCIENCES: NATURAL SCIENCES; and Biological Scien ...

MEDICAL AND HEALTH SCIENCES: MEDICAL AND HEAL ...; and Medical Biotechn ...

MEDICAL AND HEALTH SCIENCES: MEDICAL AND HEAL ...; and Health Sciences; and Public Health Gl ...

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