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Setting a baseline for global urban virome surveillance in sewage

Nieuwenhuijse, David F. (author)
Oude Munnink, Bas B. (author)
Phan, My V.T. (author)
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Hendriksen, Rene S. (author)
Bego, Artan (author)
Rees, Catherine (author)
Neilson, Elizabeth Heather (author)
Coventry, Kris (author)
Collignon, Peter (author)
Allerberger, Franz (author)
Rahube, Teddie O. (author)
Oliveira, Guilherme (author)
Ivanov, Ivan (author)
Sopheak, Thet (author)
Vuthy, Yith (author)
Yost, Christopher K. (author)
Tabo, Djim adjim (author)
Cuadros-Orellana, Sara (author)
Ke, Changwen (author)
Zheng, Huanying (author)
Baisheng, Li (author)
Jiao, Xiaoyang (author)
Donado-Godoy, Pilar (author)
Coulibaly, Kalpy Julien (author)
Hrenovic, Jasna (author)
Jergović, Matijana (author)
Karpíšková, Renáta (author)
Elsborg, Bodil (author)
Legesse, Mengistu (author)
Eguale, Tadesse (author)
Heikinheimo, Annamari (author)
Villacis, Jose Eduardo (author)
Sanneh, Bakary (author)
Malania, Lile (author)
Nitsche, Andreas (author)
Brinkmann, Annika (author)
Saba, Courage Kosi Setsoafia (author)
Kocsis, Bela (author)
Solymosi, Norbert (author)
Thorsteinsdottir, Thorunn R. (author)
Hatha, Abdulla Mohamed (author)
Alebouyeh, Masoud (author)
Morris, Dearbhaile (author)
O’Connor, Louise (author)
Cormican, Martin (author)
Moran-Gilad, Jacob (author)
Battisti, Antonio (author)
Alba, Patricia (author)
Shakenova, Zeinegul (author)
Kiiyukia, Ciira (author)
Ng’eno, Eric (author)
Raka, Lul (author)
Bērziņš, Aivars (author)
Avsejenko, Jeļena (author)
Bartkevics, Vadims (author)
Penny, Christian (author)
Rajandas, Heraa (author)
Parimannan, Sivachandran (author)
Haber, Malcolm Vella (author)
Pal, Pushkar (author)
Schmitt, Heike (author)
van Passel, Mark (author)
van de Schans, Milou G.M. (author)
Zuidema, Tina (author)
Jeunen, Gert Jan (author)
Gemmell, Neil (author)
Fashae, Kayode (author)
Wester, Astrid Louise (author)
Holmstad, Rune (author)
Hasan, Rumina (author)
Shakoor, Sadia (author)
Rojas, Maria Luz Zamudio (author)
Wasyl, Dariusz (author)
Bosevska, Golubinka (author)
Kochubovski, Mihail (author)
Radu, Cojocaru (author)
Gassama†, Amy (author)
Radosavljevic, Vladimir (author)
Tay, Moon Y.F. (author)
Zuniga-Montanez, Rogelio (author)
Wuertz, Stefan (author)
Larsson, D. G. Joakim, 1969 (author)
Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för infektionssjukdomar,Institute of Biomedicine, Department of Infectious Medicine
Trkov, Marija (author)
Keddy, Karen (author)
Esterhuyse, Kerneels (author)
Cerdà-Cuéllar, Marta (author)
Pathirage, Sujatha (author)
Larsson, D. G. Joakim, 1969 (author)
Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för infektionssjukdomar,Institute of Biomedicine, Department of Infectious Medicine
Norrgren, Leif (author)
Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Inst för biomedicin och veterinär folkhälsovetenskap,Department of Biomedical Science and Veterinary Public Health
Örn, Stefan (author)
Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Inst för biomedicin och veterinär folkhälsovetenskap,Department of Biomedical Science and Veterinary Public Health
Van der Heijden, Tanja (author)
Kumburu, Happiness Houka (author)
de RodaHusman, Ana Maria (author)
Njanpop-Lafourcade, Berthe Marie (author)
Bidjada, Pawou (author)
Nikiema-Pessinaba, Somtinda Christelle (author)
Levent, Belkis (author)
Meschke, John Scott (author)
Beck, Nicola Koren (author)
Van Dang, Chinh (author)
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 (creator_code:org_t)
 
2020-08-13
2020
English.
In: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 10
  • Journal article (peer-reviewed)
Abstract Subject headings
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  • © 2020, The Author(s). The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective.

Subject headings

TEKNIK OCH TEKNOLOGIER  -- Industriell bioteknik (hsv//swe)
ENGINEERING AND TECHNOLOGY  -- Industrial Biotechnology (hsv//eng)
NATURVETENSKAP  -- Biologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences (hsv//eng)
MEDICIN OCH HÄLSOVETENSKAP  -- Medicinsk bioteknologi (hsv//swe)
MEDICAL AND HEALTH SCIENCES  -- Medical Biotechnology (hsv//eng)
MEDICIN OCH HÄLSOVETENSKAP  -- Hälsovetenskap -- Folkhälsovetenskap, global hälsa, socialmedicin och epidemiologi (hsv//swe)
MEDICAL AND HEALTH SCIENCES  -- Health Sciences -- Public Health, Global Health, Social Medicine and Epidemiology (hsv//eng)

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By the author/editor
Nieuwenhuijse, D ...
Oude Munnink, Ba ...
Phan, My V.T.
Hendriksen, Rene ...
Bego, Artan
Rees, Catherine
show more...
Neilson, Elizabe ...
Coventry, Kris
Collignon, Peter
Allerberger, Fra ...
Rahube, Teddie O ...
Oliveira, Guilhe ...
Ivanov, Ivan
Sopheak, Thet
Vuthy, Yith
Yost, Christophe ...
Tabo, Djim adjim
Cuadros-Orellana ...
Ke, Changwen
Zheng, Huanying
Baisheng, Li
Jiao, Xiaoyang
Donado-Godoy, Pi ...
Coulibaly, Kalpy ...
Hrenovic, Jasna
Jergović, Matija ...
Karpíšková, Rená ...
Elsborg, Bodil
Legesse, Mengist ...
Eguale, Tadesse
Heikinheimo, Ann ...
Villacis, Jose E ...
Sanneh, Bakary
Malania, Lile
Nitsche, Andreas
Brinkmann, Annik ...
Saba, Courage Ko ...
Kocsis, Bela
Solymosi, Norber ...
Thorsteinsdottir ...
Hatha, Abdulla M ...
Alebouyeh, Masou ...
Morris, Dearbhai ...
O’Connor, Louise
Cormican, Martin
Moran-Gilad, Jac ...
Battisti, Antoni ...
Alba, Patricia
Shakenova, Zeine ...
Kiiyukia, Ciira
Ng’eno, Eric
Raka, Lul
Bērziņš, Aivars
Avsejenko, Jeļen ...
Bartkevics, Vadi ...
Penny, Christian
Rajandas, Heraa
Parimannan, Siva ...
Haber, Malcolm V ...
Pal, Pushkar
Schmitt, Heike
van Passel, Mark
van de Schans, M ...
Zuidema, Tina
Jeunen, Gert Jan
Gemmell, Neil
Fashae, Kayode
Wester, Astrid L ...
Holmstad, Rune
Hasan, Rumina
Shakoor, Sadia
Rojas, Maria Luz ...
Wasyl, Dariusz
Bosevska, Golubi ...
Kochubovski, Mih ...
Radu, Cojocaru
Gassama†, Amy
Radosavljevic, V ...
Tay, Moon Y.F.
Zuniga-Montanez, ...
Wuertz, Stefan
Larsson, D. G. J ...
Trkov, Marija
Keddy, Karen
Esterhuyse, Kern ...
Cerdà-Cuéllar, M ...
Pathirage, Sujat ...
Norrgren, Leif
Örn, Stefan
Van der Heijden, ...
Kumburu, Happine ...
de RodaHusman, A ...
Njanpop-Lafourca ...
Bidjada, Pawou
Nikiema-Pessinab ...
Levent, Belkis
Meschke, John Sc ...
Beck, Nicola Kor ...
Van Dang, Chinh
show less...
About the subject
ENGINEERING AND TECHNOLOGY
ENGINEERING AND ...
and Industrial Biote ...
NATURAL SCIENCES
NATURAL SCIENCES
and Biological Scien ...
MEDICAL AND HEALTH SCIENCES
MEDICAL AND HEAL ...
and Medical Biotechn ...
MEDICAL AND HEALTH SCIENCES
MEDICAL AND HEAL ...
and Health Sciences
and Public Health Gl ...
Articles in the publication
Scientific Repor ...
By the university
University of Gothenburg
Swedish University of Agricultural Sciences

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