Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

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MARC

Munk, P. (author)

Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

Article/chapterEnglish2022

Publisher, publication year, extent ...

2022-12-01
Springer Science and Business Media LLC,2022

Numbers

LIBRIS-ID:oai:gup.ub.gu.se/324450
https://gup.ub.gu.se/publication/324450URI
https://doi.org/10.1038/s41467-022-34312-7DOI

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Language:English

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SwePubSwePub

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Subject category:ref swepub-contenttype
Subject category:art swepub-publicationtype

Notes

Antimicrobial resistance (AMR) is a major threat to global health. Understanding the emergence, evolution, and transmission of individual antibiotic resistance genes (ARGs) is essential to develop sustainable strategies combatting this threat. Here, we use metagenomic sequencing to analyse ARGs in 757 sewage samples from 243 cities in 101 countries, collected from 2016 to 2019. We find regional patterns in resistomes, and these differ between subsets corresponding to drug classes and are partly driven by taxonomic variation. The genetic environments of 49 common ARGs are highly diverse, with most common ARGs carried by multiple distinct genomic contexts globally and sometimes on plasmids. Analysis of flanking sequence revealed ARG-specific patterns of dispersal limitation and global transmission. Our data furthermore suggest certain geographies are more prone to transmission events and should receive additional attention.

Subject headings and genre

MEDICIN OCH HÄLSOVETENSKAP Klinisk medicin hsv//swe
MEDICAL AND HEALTH SCIENCES Clinical Medicine hsv//eng

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Brinch, C. (author)
Møller, F. D. (author)
Petersen, T. N. (author)
Hendriksen, R. S. (author)
Seyfarth, A. M. (author)
Kjeldgaard, J. S. (author)
Svendsen, C. A. (author)
van Bunnik, B. (author)
Berglund, FannyGothenburg University,Göteborgs universitet,CARe - Centrum för antibiotikaresistensforskning,Centre for antibiotic resistance research, CARe(Swepub:gu)xberfa (author)
Bego, A. (author)
Power, P. (author)
Rees, C. (author)
Lambrinidis, D. (author)
Neilson, E. H. J. (author)
Gibb, K. (author)
Coventry, K. (author)
Collignon, P. (author)
Cassar, S. (author)
Allerberger, F. (author)
Begum, A. (author)
Hossain, Z. Z. (author)
Worrell, C. (author)
Vandenberg, O. (author)
Pieters, I. (author)
Victorien, D. T. (author)
Gutierrez, A. D. S. (author)
Soria, F. (author)
Grujić, V. R. (author)
Mazalica, N. (author)
Rahube, T. O. (author)
Tagliati, C. A. (author)
Rodrigues, D. (author)
Oliveira, G. (author)
de Souza, L. C. R. (author)
Ivanov, I. (author)
Juste, B. I. (author)
Oumar, T. (author)
Sopheak, T. (author)
Vuthy, Y. (author)
Ngandijo, A. (author)
Nzouankeu, A. (author)
Olivier, Z. A. A. J. (author)
Yost, C. K. (author)
Kumar, P. (author)
Brar, S. K. (author)
Tabo, D. A. (author)
Adell, A. D. (author)
Paredes-Osses, E. (author)
Martinez, M. C. (author)
Cuadros-Orellana, S. (author)
Ke, C. (author)
Zheng, H. (author)
Baisheng, L. (author)
Lau, L. T. (author)
Chung, T. (author)
Jiao, X. (author)
Yu, Y. (author)
JiaYong, Z. (author)
Morales, J. F. B. (author)
Valencia, M. F. (author)
Donado-Godoy, P. (author)
Coulibaly, K. J. (author)
Hrenovic, J. (author)
Jergović, M. (author)
Karpíšková, R. (author)
Deogratias, Z. N. (author)
Elsborg, B. (author)
Hansen, L. T. (author)
Jensen, P. E. (author)
Abouelnaga, M. (author)
Salem, M. F. (author)
Koolmeister, M. (author)
Legesse, M. (author)
Eguale, T. (author)
Heikinheimo, A. (author)
Le Guyader, S. (author)
Schaeffer, J. (author)
Villacis, J. E. (author)
Sanneh, B. (author)
Malania, L. (author)
Nitsche, A. (author)
Brinkmann, A. (author)
Schubert, S. (author)
Hesse, S. (author)
Berendonk, T. U. (author)
Saba, C. K. S. (author)
Mohammed, J. (author)
Feglo, P. K. (author)
Banu, R. A. (author)
Kotzamanidis, C. (author)
Lytras, E. (author)
Lickes, S. A. (author)
Kocsis, B. (author)
Solymosi, N. (author)
Thorsteinsdottir, T. R. (author)
Hatha, A. M. (author)
Ballal, M. (author)
Bangera, S. R. (author)
Fani, F. (author)
Alebouyeh, M. (author)
Morris, D. (author)
O’Connor, L. (author)
Cormican, M. (author)
Moran-Gilad, J. (author)
Battisti, A. (author)
Diaconu, E. L. (author)
Corno, G. (author)
Di Cesare, A. (author)
Alba, P. (author)
Hisatsune, J. (author)
Yu, L. (author)
Kuroda, M. (author)
Sugai, M. (author)
Kayama, S. (author)
Shakenova, Z. (author)
Kiiyukia, C. (author)
Ng’eno, E. (author)
Raka, L. (author)
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Fakhraldeen, S. A. (author)
Alaati, T. (author)
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Avsejenko, J. (author)
Kokina, K. (author)
Streikisa, M. (author)
Bartkevics, V. (author)
Matar, G. M. (author)
Daoud, Z. (author)
Pereckienė, A. (author)
Butrimaite-Ambrozeviciene, C. (author)
Penny, C. (author)
Bastaraud, A. (author)
Rasolofoarison, T. (author)
Collard, J. M. (author)
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Banda, D. L. (author)
Amin, A. (author)
Rajandas, H. (author)
Parimannan, S. (author)
Spiteri, D. (author)
Haber, M. V. (author)
Santchurn, S. J. (author)
Vujacic, A. (author)
Djurovic, D. (author)
Bouchrif, B. (author)
Karraouan, B. (author)
Vubil, D. C. (author)
Pal, P. (author)
Schmitt, H. (author)
van Passel, M. (author)
Jeunen, G. J. (author)
Gemmell, N. (author)
Chambers, S. T. (author)
Mendoza, F. P. (author)
Huete-Pιrez, J. (author)
Vilchez, S. (author)
Ahmed, A. O. (author)
Adisa, I. R. (author)
Odetokun, I. A. (author)
Fashae, K. (author)
Sørgaard, A. M. (author)
Wester, A. L. (author)
Ryrfors, P. (author)
Holmstad, R. (author)
Mohsin, M. (author)
Hasan, R. (author)
Shakoor, S. (author)
Gustafson, N. W. (author)
Schill, C. H. (author)
Rojas, M. L. Z. (author)
Velasquez, J. E. (author)
Magtibay, B. B. (author)
Catangcatang, K. (author)
Sibulo, R. (author)
Yauce, F. C. (author)
Wasyl, D. (author)
Manaia, C. (author)
Rocha, J. (author)
Martins, J. (author)
Álvaro, P. (author)
Di Yoong Wen, D. (author)
Shin, H. (author)
Hur, H. G. (author)
Yoon, S. (author)
Bosevska, G. (author)
Kochubovski, M. (author)
Cojocaru, R. (author)
Burduniuc, O. (author)
Hong, P. Y. (author)
Perry, M. R. (author)
Gassama, A. (author)
Radosavljevic, V. (author)
Tay, M. Y. F. (author)
Zuniga-Montanez, R. (author)
Wuertz, S. (author)
Gavačová, D. (author)
Pastuchová, K. (author)
Truska, P. (author)
Trkov, M. (author)
Keddy, K. (author)
Esterhuyse, K. (author)
Song, M. J. (author)
Quintela-Baluja, M. (author)
Lopez, M. G. (author)
Cerdà-Cuéllar, M. (author)
Perera, R. R. D. P. (author)
Bandara, N. K. B. K. R. G. W. (author)
Premasiri, H. I. (author)
Pathirage, S. (author)
Charlemagne, K. (author)
Rutgersson, Carolin,1983 (author)
Norrgren, L. (author)
Örn, S. (author)
Boss, R. (author)
Van der Heijden, T. (author)
Hong, Y. P. (author)
Kumburu, H. H. (author)
Mdegela, R. H. (author)
Hounmanou, Y. M. G. (author)
Chonsin, K. (author)
Suthienkul, O. (author)
Thamlikitkul, V. (author)
de Roda Husman, A. M. (author)
Bidjada, B. (author)
Njanpop-Lafourcade, B. M. (author)
Nikiema-Pessinaba, S. C. (author)
Levent, B. (author)
Kurekci, C. (author)
Ejobi, F. (author)
Kalule, J. B. (author)
Thomsen, J. (author)
Obaidi, O. (author)
Jassim, L. M. (author)
Moore, A. (author)
Leonard, A. (author)
Graham, D. W. (author)
Bunce, J. T. (author)
Zhang, L. (author)
Gaze, W. H. (author)
Lefor, B. (author)
Capone, D. (author)
Sozzi, E. (author)
Brown, J. (author)
Meschke, J. S. (author)
Sobsey, M. D. (author)
Davis, M. (author)
Beck, N. K. (author)
Sukapanpatharam, P. (author)
Truong, P. (author)
Lilienthal, R. (author)
Kang, S. (author)
Wittum, T. E. (author)
Rigamonti, N. (author)
Baklayan, P. (author)
Van, C. D. (author)
Tran, D. M. N. (author)
Do Phuc, N. (author)
Kwenda, G. (author)
Koopmans, M. (author)
Woolhouse, M. (author)
Aarestrup, F. M. (author)
Larsson, D. G. Joakim,1969Gothenburg University,Göteborgs universitet,CARe - Centrum för antibiotikaresistensforskning,Institutionen för biomedicin, avdelningen för infektionssjukdomar,Centre for antibiotic resistance research, CARe,Institute of Biomedicine, Department of Infectious Medicine(Swepub:gu)xlarjo (author)
Göteborgs universitetCARe - Centrum för antibiotikaresistensforskning (creator_code:org_t)

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By the author/editor: Munk, P.; Brinch, C.; Møller, F. D.; Petersen, T. N.; Hendriksen, R. S ...; Seyfarth, A. M.; show more...; Kjeldgaard, J. S ...; Svendsen, C. A.; van Bunnik, B.; Berglund, Fanny; Bego, A.; Power, P.; Rees, C.; Lambrinidis, D.; Neilson, E. H. J ...; Gibb, K.; Coventry, K.; Collignon, P.; Cassar, S.; Allerberger, F.; Begum, A.; Hossain, Z. Z.; Worrell, C.; Vandenberg, O.; Pieters, I.; Victorien, D. T.; Gutierrez, A. D. ...; Soria, F.; Grujić, V. R.; Mazalica, N.; Rahube, T. O.; Tagliati, C. A.; Rodrigues, D.; Oliveira, G.; de Souza, L. C. ...; Ivanov, I.; Juste, B. I.; Oumar, T.; Sopheak, T.; Vuthy, Y.; Ngandijo, A.; Nzouankeu, A.; Olivier, Z. A. A ...; Yost, C. K.; Kumar, P.; Brar, S. K.; Tabo, D. A.; Adell, A. D.; Paredes-Osses, E ...; Martinez, M. C.; Cuadros-Orellana ...; Ke, C.; Zheng, H.; Baisheng, L.; Lau, L. T.; Chung, T.; Jiao, X.; Yu, Y.; JiaYong, Z.; Morales, J. F. B ...; Valencia, M. F.; Donado-Godoy, P.; Coulibaly, K. J.; Hrenovic, J.; Jergović, M.; Karpíšková, R.; Deogratias, Z. N ...; Elsborg, B.; Hansen, L. T.; Jensen, P. E.; Abouelnaga, M.; Salem, M. F.; Koolmeister, M.; Legesse, M.; Eguale, T.; Heikinheimo, A.; Le Guyader, S.; Schaeffer, J.; Villacis, J. E.; Sanneh, B.; Malania, L.; Nitsche, A.; Brinkmann, A.; Schubert, S.; Hesse, S.; Berendonk, T. U.; Saba, C. K. S.; Mohammed, J.; Feglo, P. K.; Banu, R. A.; Kotzamanidis, C.; Lytras, E.; Lickes, S. A.; Kocsis, B.; Solymosi, N.; Thorsteinsdottir ...; Hatha, A. M.; Ballal, M.; Bangera, S. R.; Fani, F.; Alebouyeh, M.; Morris, D.; O’Connor, L.; Cormican, M.; Moran-Gilad, J.; Battisti, A.; Diaconu, E. L.; Corno, G.; Di Cesare, A.; Alba, P.; Hisatsune, J.; Yu, L.; Kuroda, M.; Sugai, M.; Kayama, S.; Shakenova, Z.; Kiiyukia, C.; Ng’eno, E.; Raka, L.; Jamil, K.; Fakhraldeen, S. ...; Alaati, T.; Bērziņš, A.; Avsejenko, J.; Kokina, K.; Streikisa, M.; Bartkevics, V.; Matar, G. M.; Daoud, Z.; Pereckienė, A.; Butrimaite-Ambro ...; Penny, C.; Bastaraud, A.; Rasolofoarison, ...; Collard, J. M.; Samison, L. H.; Andrianarivelo, ...; Banda, D. L.; Amin, A.; Rajandas, H.; Parimannan, S.; Spiteri, D.; Haber, M. V.; Santchurn, S. J.; Vujacic, A.; Djurovic, D.; Bouchrif, B.; Karraouan, B.; Vubil, D. C.; Pal, P.; Schmitt, H.; van Passel, M.; Jeunen, G. J.; Gemmell, N.; Chambers, S. T.; Mendoza, F. P.; Huete-Pιrez, J.; Vilchez, S.; Ahmed, A. O.; Adisa, I. R.; Odetokun, I. A.; Fashae, K.; Sørgaard, A. M.; Wester, A. L.; Ryrfors, P.; Holmstad, R.; Mohsin, M.; Hasan, R.; Shakoor, S.; Gustafson, N. W.; Schill, C. H.; Rojas, M. L. Z.; Velasquez, J. E.; Magtibay, B. B.; Catangcatang, K.; Sibulo, R.; Yauce, F. C.; Wasyl, D.; Manaia, C.; Rocha, J.; Martins, J.; Álvaro, P.; Di Yoong Wen, D.; Shin, H.; Hur, H. G.; Yoon, S.; Bosevska, G.; Kochubovski, M.; Cojocaru, R.; Burduniuc, O.; Hong, P. Y.; Perry, M. R.; Gassama, A.; Radosavljevic, V ...; Tay, M. Y. F.; Zuniga-Montanez, ...; Wuertz, S.; Gavačová, D.; Pastuchová, K.; Truska, P.; Trkov, M.; Keddy, K.; Esterhuyse, K.; Song, M. J.; Quintela-Baluja, ...; Lopez, M. G.; Cerdà-Cuéllar, M ...; Perera, R. R. D. ...; Bandara, N. K. B ...; Premasiri, H. I.; Pathirage, S.; Charlemagne, K.; Rutgersson, Caro ...; Norrgren, L.; Örn, S.; Boss, R.; Van der Heijden, ...; Hong, Y. P.; Kumburu, H. H.; Mdegela, R. H.; Hounmanou, Y. M. ...; Chonsin, K.; Suthienkul, O.; Thamlikitkul, V.; de Roda Husman, ...; Bidjada, B.; Njanpop-Lafourca ...; Nikiema-Pessinab ...; Levent, B.; Kurekci, C.; Ejobi, F.; Kalule, J. B.; Thomsen, J.; Obaidi, O.; Jassim, L. M.; Moore, A.; Leonard, A.; Graham, D. W.; Bunce, J. T.; Zhang, L.; Gaze, W. H.; Lefor, B.; Capone, D.; Sozzi, E.; Brown, J.; Meschke, J. S.; Sobsey, M. D.; Davis, M.; Beck, N. K.; Sukapanpatharam, ...; Truong, P.; Lilienthal, R.; Kang, S.; Wittum, T. E.; Rigamonti, N.; Baklayan, P.; Van, C. D.; Tran, D. M. N.; Do Phuc, N.; Kwenda, G.; Koopmans, M.; Woolhouse, M.; Aarestrup, F. M.; Larsson, D. G. J ...; show less...

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