WFRF:(Chiaruttini Nicolas)
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- Tischer, ChristianEuropean Molecular Biology Laboratory Heidelberg (author)
BigDataProcessor2 : A free and open-source Fiji plugin for inspection and processing of TB sized image data
- Article/chapterEnglish2021
Publisher, publication year, extent ...
- 2021-02-17
- Oxford University Press (OUP),2021
Numbers
- LIBRIS-ID:oai:lup.lub.lu.se:036c6753-4c4a-46f5-84f6-5df5bb21f6a9
- https://lup.lub.lu.se/record/036c6753-4c4a-46f5-84f6-5df5bb21f6a9URI
- https://doi.org/10.1093/bioinformatics/btab106DOI
Supplementary language notes
- Language:English
- Summary in:English
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- SwePubSwePub
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Notes
- SUMMARY: Modern bioimaging and related areas such as sensor technology have undergone tremendous development over the last few years. As a result, contemporary imaging techniques, particularly electron microscopy (EM) and light sheet microscopy, can frequently generate datasets attaining sizes of several terabytes (TB). As a consequence, even seemingly simple data operations such as cropping, chromatic- and drift-corrections and even visualisation, poses challenges when applied to thousands of time points or tiles. To address this we developed BigDataProcessor2-a Fiji plugin facilitating processing workflows for TB sized image datasets.AVAILABILITY AND IMPLEMENTATION: BigDataProcessor2 is available as a Fiji plugin via the BigDataProcessor update site. The application is implemented in Java and the code is publicly available on GitHub (https://github.com/bigdataprocessor/bigdataprocessor2).
Subject headings and genre
- NATURVETENSKAP Data- och informationsvetenskap Programvaruteknik hsv//swe
- NATURAL SCIENCES Computer and Information Sciences Software Engineering hsv//eng
- SAMHÄLLSVETENSKAP Medie- och kommunikationsvetenskap Systemvetenskap, informationssystem och informatik med samhällsvetenskaplig inriktning hsv//swe
- SOCIAL SCIENCES Media and Communications Information Systems, Social aspects hsv//eng
Added entries (persons, corporate bodies, meetings, titles ...)
- Ravindran, AshisHeidelberg University (author)
- Reither, SabineEuropean Molecular Biology Laboratory Heidelberg (author)
- Chiaruttini, NicolasSwiss Federal Institute of Technology (author)
- Pepperkok, RainerEuropean Molecular Biology Laboratory Heidelberg (author)
- Norlin, NilsLund University,Lunds universitet,Molekylär neuromodulering,Forskargrupper vid Lunds universitet,Lund University Bioimaging Center,Medicinska fakulteten,Molecular Neuromodulation,Lund University Research Groups,Faculty of Medicine,European Molecular Biology Laboratory Heidelberg(Swepub:lu)ni5154no (author)
- European Molecular Biology Laboratory HeidelbergHeidelberg University (creator_code:org_t)
Related titles
- In:Bioinformatics: Oxford University Press (OUP)37:18, s. 3079-30811367-48031460-2059
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