SwePub
Sök i LIBRIS databas

  Extended search

WFRF:(Skennerton Connor)
 

Search: WFRF:(Skennerton Connor) > Biopython Project U...

  • 1 of 1
  • Previous record
  • Next record
  •    To hitlist
  • Brueffer, ChristianLund University,Lunds universitet,Bröstcancer-genetik,Sektion I,Institutionen för kliniska vetenskaper, Lund,Medicinska fakulteten,Breastcancer-genetics,Section I,Department of Clinical Sciences, Lund,Faculty of Medicine (author)

Biopython Project Update 2016

  • Article/chapterEnglish2016

Publisher, publication year, extent ...

  • 2016

Numbers

  • LIBRIS-ID:oai:lup.lub.lu.se:90ff3c56-f3a1-4237-bd0d-276db959930b
  • https://lup.lub.lu.se/record/90ff3c56-f3a1-4237-bd0d-276db959930bURI
  • https://doi.org/10.7490/f1000research.1112611.1DOI

Supplementary language notes

  • Language:English
  • Summary in:English

Part of subdatabase

Classification

  • Subject category:kon swepub-publicationtype
  • Subject category:vet swepub-contenttype

Notes

  • The Biopython Project is a long-running distributed collaborative effort, supported by the Open Bioinformatics Foundation, which develops a freely available Python library for biological computation.We present here details of the latest Biopython release - version 1.66. New features include: extended Bio.KEGG and Bio.Graphics modules to support drawing KEGG pathways with transparency; extended “abi” Bio.SeqIO parser to decode almost all documented fields used by ABIF instruments; a QCPSuperimposer module using the Quaternion Characteristic Polynomial algorithm for superimposing structures to Bio.PDB; and an extended Bio.Entrez module to implement the NCBI Entrez Citation Matching function and to support NCBI XML files with XSD schemas. Additionally we fixed miscellaneous bugs, enhanced our test suite and continued our efforts to abide by the PEP8 coding style guidelines.We are currently preparing a new release – version 1.67 – that will deprecate the ability to compare SeqRecord objects with “==”, which sometimes lead to surprising results. In addition it will feature a new experimental Bio.phenotype module for working with Phenotype Microarray data; updates to Bio.Data toinclude NCBI genetic code table 25, covering Candidate Division SR1 and Gracilibacteria; an update to Bio.Restriction to include the REBASE May 2016 restriction enzyme list; updates to BioSQL to use foreign keys with SQLite3 databases; as well as corrections to the Bio.Entrez module and the MMCIF structure parser.Our website has been migrated from MediaWiki to GitHub Pages and is now under version control. The continuous integration process on GitHub has been enhanced by including external services like Landscape, Quantified Code and Codecov to perform quality review, test coverage analysis and generation of quality metrics.Finally, our range of Docker containers has been greatly enhanced. In addition to a basic container that includes Python 2 and 3 with Biopython and all its dependencies, as well as a BioSQL container, we now also provide two versions of Jupyter notebook containers: a basic one, and a version including the Biopython tutorial as notebooks.

Subject headings and genre

Added entries (persons, corporate bodies, meetings, titles ...)

  • Antao, Tiago (author)
  • Cock, Peter (author)
  • Talevich, Eric (author)
  • de Hoon, Michiel (author)
  • Arindrarto, Wibowo (author)
  • Pritchard, Leighton (author)
  • Sharma, Anuj (author)
  • Rasche, Eric (author)
  • Rosenfeld, Aaron (author)
  • Skennerton, Connor (author)
  • Galardini, Marco (author)
  • Piotrowski, Markus (author)
  • Bröstcancer-genetikSektion I (creator_code:org_t)

Internet link

To the university's database

  • 1 of 1
  • Previous record
  • Next record
  •    To hitlist

Kungliga biblioteket hanterar dina personuppgifter i enlighet med EU:s dataskyddsförordning (2018), GDPR. Läs mer om hur det funkar här.
Så här hanterar KB dina uppgifter vid användning av denna tjänst.

 
pil uppåt Close

Copy and save the link in order to return to this view