Search: WFRF:(Ralf A)
> (2020-2024) >
Proteomics Standard...
Proteomics Standards Initiative's ProForma 2.0 : Unifying the Encoding of Proteoforms and Peptidoforms br
-
- LeDuc, Richard D. (author)
- Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60611 USA.
-
- Deutsch, Eric W. (author)
- Inst Syst Biol, Seattle, WA 98109 USA.
-
- Binz, Pierre-Alain (author)
- Lausanne Univ Hosp, Clin Chem Serv, CH-1011 Lausanne, Switzerland.
-
show more...
-
- Fellers, Ryan T. (author)
- Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60611 USA.
-
- Cesnik, Anthony J. (author)
- KTH,Science for Life Laboratory, SciLifeLab,Cellulär och klinisk proteomik,Stanford Univ, Dept Genet, Stanford, CA 94305 USA.;Chan Zuckerberg Biohub, San Francisco, CA 94158 USA.
-
- Klein, Joshua A. (author)
- Boston Univ, Program Bioinformat, Boston, MA 02215 USA.
-
- Van den Bossche, Tim (author)
- VIB UGent Ctr Med Biotechnol, B-9052 Ghent, Belgium.;Univ Ghent, Fac Med & Hlth Sci, Dept Biomol Med, B-9000 Ghent, Belgium.
-
- Gabriels, Ralf (author)
- VIB UGent Ctr Med Biotechnol, B-9052 Ghent, Belgium.;Univ Ghent, Fac Med & Hlth Sci, Dept Biomol Med, B-9000 Ghent, Belgium.
-
- Yalavarthi, Arshika (author)
- Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60611 USA.
-
- Perez-Riverol, Yasset (author)
- EMBL European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Cambridge CB10 1SD, England.
-
- Carver, Jeremy (author)
- UCSD, Ctr Computat Mass Spectrometry, Dept Comp Sci & Engn, La Jolla, CA 92093 USA.;UCSD, Skaggs Sch Pharm & Pharmaceut Sci, La Jolla, CA 92093 USA.
-
- Bittremieux, Wout (author)
- UCSD, Skaggs Sch Pharm & Pharmaceut Sci, La Jolla, CA 92093 USA.;UCSD, Ctr Computat Mass Spectrometry, La Jolla, CA 92093 USA.
-
- Kawano, Shin (author)
- Toyama Univ Int Studies, Toyama, Toyama 9301292, Japan.;Res Org Informat & Syst, Joint Support Ctr Data Sci Res, Database Ctr Life Sci, Kashiwa, Chiba 2770871, Japan.
-
- Pullman, Benjamin (author)
- UCSD, Ctr Computat Mass Spectrometry, La Jolla, CA 92093 USA.;UCSD, Dept Comp Sci & Engn, La Jolla, CA 92093 USA.
-
- Bandeira, Nuno (author)
- UCSD, Ctr Computat Mass Spectrometry, Dept Comp Sci & Engn, La Jolla, CA 92093 USA.;UCSD, Skaggs Sch Pharm & Pharmaceut Sci, La Jolla, CA 92093 USA.
-
- Kelleher, Neil L. (author)
- Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60611 USA.
-
- Thomas, Paul M. (author)
- Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60611 USA.;AbbVie Inc, 1401 Sheridan Rd, N Chicago, IL 60064 USA.
-
- Vizcaino, Juan Antonio (author)
- EMBL European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Cambridge CB10 1SD, England.
-
show less...
-
Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60611 USA Inst Syst Biol, Seattle, WA 98109 USA. (creator_code:org_t)
- 2022-03-15
- 2022
- English.
-
In: Journal of Proteome Research. - : American Chemical Society (ACS). - 1535-3893 .- 1535-3907. ; 21:4, s. 1189-1195
- Related links:
-
https://urn.kb.se/re...
-
show more...
-
https://doi.org/10.1...
-
show less...
Abstract
Subject headings
Close
- It is important for the proteomics community to have a standardizedmanner to represent all possible variations of a protein or peptide primary sequence,including natural, chemically induced, and artifactual modifications. The HumanProteome Organization Proteomics Standards Initiative in collaboration with severalmembers of the Consortium for Top-Down Proteomics (CTDP) has developed astandard notation called ProForma 2.0, which is a substantial extension of the originalProForma notation developed by the CTDP. ProForma 2.0 aims to unify therepresentation of proteoforms and peptidoforms. ProForma 2.0 supports use casesneeded for bottom-up and middle-/top-down proteomics approaches and allows theencoding of highly modified proteins and peptides using a human- and machine-readable string. ProForma 2.0 can be used to represent protein modifications in a specified or ambiguous location, designated bymass shifts, chemical formulas, or controlled vocabulary terms, including cross-links (natural and chemical) and atomic isotopes.Notational conventions are based on public controlled vocabularies and ontologies. The most up-to-date full specification documentand information about software implementations are available athttp://psidev.info/proforma.
Subject headings
- NATURVETENSKAP -- Biologi -- Biokemi och molekylärbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Biochemistry and Molecular Biology (hsv//eng)
Keyword
- ProForma
- proteoform
- peptidoform
- top-down proteomics
- file formats
- data standards
- mass spectrometry
- FAIR
Publication and Content Type
- ref (subject category)
- art (subject category)
Find in a library
To the university's database
- By the author/editor
-
LeDuc, Richard D ...
-
Deutsch, Eric W.
-
Binz, Pierre-Ala ...
-
Fellers, Ryan T.
-
Cesnik, Anthony ...
-
Klein, Joshua A.
-
show more...
-
Van den Bossche, ...
-
Gabriels, Ralf
-
Yalavarthi, Arsh ...
-
Perez-Riverol, Y ...
-
Carver, Jeremy
-
Bittremieux, Wou ...
-
Kawano, Shin
-
Pullman, Benjami ...
-
Bandeira, Nuno
-
Kelleher, Neil L ...
-
Thomas, Paul M.
-
Vizcaino, Juan A ...
-
show less...
- About the subject
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Biochemistry and ...
- Articles in the publication
-
Journal of Prote ...
- By the university
-
Royal Institute of Technology