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Search: id:"swepub:oai:lup.lub.lu.se:eb2b9cba-7e7e-45c3-b032-1d9a779e5a8c" > OME-Zarr : A cloud-...

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  • Moore, JoshGerman BioImaging-Gesellschaft für Mikroskopie und Bildanalyse e.V., Constance, Germany (author)

OME-Zarr : A cloud-optimized bioimaging file format with international community support

  • Article/chapterEnglish2023

Publisher, publication year, extent ...

  • Springer Nature,2023

Numbers

  • LIBRIS-ID:oai:lup.lub.lu.se:eb2b9cba-7e7e-45c3-b032-1d9a779e5a8c
  • https://lup.lub.lu.se/record/eb2b9cba-7e7e-45c3-b032-1d9a779e5a8cURI
  • https://doi.org/10.1007/s00418-023-02209-1DOI
  • https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-338547URI

Supplementary language notes

  • Language:English
  • Summary in:English

Part of subdatabase

Classification

  • Subject category:art swepub-publicationtype
  • Subject category:ref swepub-contenttype

Notes

  • QC 20231108
  • A growing community is constructing a next-generation file format (NGFF) for bioimaging to overcome problems of scalability and heterogeneity. Organized by the Open Microscopy Environment (OME), individuals and institutes across diverse modalities facing these problems have designed a format specification process (OME-NGFF) to address these needs. This paper brings together a wide range of those community members to describe the cloud-optimized format itself-OME-Zarr-along with tools and data resources available today to increase FAIR access and remove barriers in the scientific process. The current momentum offers an opportunity to unify a key component of the bioimaging domain-the file format that underlies so many personal, institutional, and global data management and analysis tasks.

Subject headings and genre

Added entries (persons, corporate bodies, meetings, titles ...)

  • Basurto-Lozada, DanielaUniversity of Newcastle upon Tyne (author)
  • Besson, SébastienUniversity of Dundee (author)
  • Bogovic, JohnHoward Hughes Medical Institute (author)
  • Bragantini, JordãoChan–Zuckerberg Biohub (author)
  • Brown, Eva MAllen Institute for Brain Science,Kitware (author)
  • Burel, Jean-MarieUniversity of Dundee(Swepub:lu)extLU-281 (author)
  • Moreno, Xavier CasasKTH,KTH Royal Institute of Technology,Science for Life Laboratory, SciLifeLab,Biofysik(Swepub:kth)u1och6b4 (author)
  • de Medeiros, GustavoFriedrich Miescher Institute for Biomedical Research (author)
  • Diel, Erin EGlencoe Software Inc. (author)
  • Gault, DavidUniversity of Dundee (author)
  • Ghosh, Satrajit SMassachusetts Institute of Technology,Axle Research and Technology (author)
  • Gold, IlanHarvard Medical School (author)
  • Halchenko, Yaroslav ODartmouth College (author)
  • Hartley, MatthewEuropean Bioinformatics Institute (author)
  • Horsfall, DaveUniversity of Newcastle upon Tyne (author)
  • Keller, Mark SHarvard Medical School (author)
  • Kittisopikul, MarkHoward Hughes Medical Institute (author)
  • Kovacs, GaborAllen Institute for Neural Dynamics (author)
  • Küpcü Yoldaş, AybükeEuropean Bioinformatics Institute (author)
  • Kyoda, KojiRIKEN Center for Biosystems Dynamics Research (author)
  • le Tournoulx de la Villegeorges, Albanescalable minds GmbH (author)
  • Li, TongWellcome Trust Sanger Institute (author)
  • Liberali, PriscaFriedrich Miescher Institute for Biomedical Research (author)
  • Lindner, DominikUniversity of Dundee (author)
  • Linkert, MelissaGlencoe Software Inc. (author)
  • Lüthi, JoelFriedrich Miescher Institute for Biomedical Research (author)
  • Maitin-Shepard, JeremyGoogle Research (author)
  • Manz, TrevorHarvard Medical School (author)
  • Marconato, LucaHelmholtz Zentrum München (author)
  • McCormick, MatthewKitware (author)
  • Lange, MerlinChan–Zuckerberg Biohub (author)
  • Mohamed, KhaledUniversity of Dundee (author)
  • Moore, WilliamUniversity of Dundee (author)
  • Norlin, NilsLund University,Lunds universitet,NanoLund: Centre for Nanoscience,Annan verksamhet, LTH,Lunds Tekniska Högskola,Molekylär neuromodulering,Forskargrupper vid Lunds universitet,Lund University Bioimaging Center,Medicinska fakulteten,LTH profilområde: Nanovetenskap och halvledarteknologi,LTH profilområden,LTH profilområde: Teknik för hälsa,Other operations, LTH,Faculty of Engineering, LTH,Molecular Neuromodulation,Lund University Research Groups,Faculty of Medicine,LTH Profile Area: Nanoscience and Semiconductor Technology,LTH Profile areas,Faculty of Engineering, LTH,LTH Profile Area: Engineering Health,Faculty of Engineering, LTH(Swepub:lu)ni5154no (author)
  • Ouyang, WeiKTH,KTH Royal Institute of Technology,Science for Life Laboratory, SciLifeLab,Biofysik(Swepub:kth)u1q2u8fe (author)
  • Özdemir, BugraEuropean Molecular Biology Laboratory Heidelberg (author)
  • Palla, GiovanniQIMR Berghofer Medical Research Institute (author)
  • Pape, ConstantinInstitute for X-Ray Physics, Georg-August-Universität Göttingen (author)
  • Pelkmans, LucasUniversity of Zurich (author)
  • Pietzsch, TobiasHoward Hughes Medical Institute (author)
  • Preibisch, StephanHoward Hughes Medical Institute (author)
  • Prete, MartinWellcome Trust Sanger Institute (author)
  • Rzepka, Normanscalable minds GmbH (author)
  • Samee, SameeulAxle Research and Technology (author)
  • Schaub, NicholasNational Health Research Institutes Taiwan (NHRI) (author)
  • Sidky, HythemAxle Research and Technology (author)
  • Solak, Ahmet CanChan–Zuckerberg Biohub (author)
  • Stirling, David R (author)
  • Striebel, Jonathan (author)
  • Swedlow, Jason R.Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK (author)
  • German BioImaging-Gesellschaft für Mikroskopie und Bildanalyse e.V., Constance, GermanyUniversity of Newcastle upon Tyne (creator_code:org_t)

Related titles

  • In:Histochemistry and Cell Biology: Springer Nature160:3, s. 223-2511432-119X0948-6143

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