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Search: id:"swepub:oai:lup.lub.lu.se:f048c14e-8b20-440e-be69-6b7e533e40e4" > A community proposa...

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  • Vizcaíno, Juan AntonioEuropean Bioinformatics Institute (author)

A community proposal to integrate proteomics activities in ELIXIR

  • Article/chapterEnglish2017

Publisher, publication year, extent ...

  • 2017-06-13
  • F1000 Research Ltd,2017

Numbers

  • LIBRIS-ID:oai:lup.lub.lu.se:f048c14e-8b20-440e-be69-6b7e533e40e4
  • https://lup.lub.lu.se/record/f048c14e-8b20-440e-be69-6b7e533e40e4URI
  • https://doi.org/10.12688/f1000research.11751.1DOI

Supplementary language notes

  • Language:English
  • Summary in:English

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  • Subject category:art swepub-publicationtype
  • Subject category:ref swepub-contenttype

Notes

  • Computational approaches have been major drivers behind the progress of proteomics in recent years. The aim of this white paper is to provide a framework for integrating computational proteomics into ELIXIR in the near future, and thus to broaden the portfolio of omics technologies supported by this European distributed infrastructure. This white paper is the direct result of a strategy meeting on 'The Future of Proteomics in ELIXIR' that took place in March 2017 in Tübingen (Germany), and involved representatives of eleven ELIXIR nodes. These discussions led to a list of priority areas in computational proteomics that would complement existing activities and close gaps in the portfolio of tools and services offered by ELIXIR so far. We provide some suggestions on how these activities could be integrated into ELIXIR's existing platforms, and how it could lead to a new ELIXIR use case in proteomics. We also highlight connections to the related field of metabolomics, where similar activities are ongoing. This white paper could thus serve as a starting point for the integration of computational proteomics into ELIXIR. Over the next few months we will be working closely with all stakeholders involved, and in particular with other representatives of the proteomics community, to further refine this paper.

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  • Walzer, MathiasEuropean Bioinformatics Institute (author)
  • Jiménez, Rafael C.ELIXIR Hub, UK (author)
  • Bittremieux, WoutUniversity of Antwerp (author)
  • Bouyssié, DavidInstitut Gustave Roussy (author)
  • Carapito, ChristineInstitut Gustave Roussy (author)
  • Corrales, FernandoCSIC National Center for Biotechnology (CNB) (author)
  • Ferro, MyriamInstitut Gustave Roussy (author)
  • Heck, Albert J RUtrecht University (author)
  • Horvatovich, PeterUniversity of Groningen(Swepub:lu)pe4034ho (author)
  • Hubalek, MartinAcademy of Sciences of the Czech Republic (author)
  • Lane, LydieSwiss Institute for Bioinformatics (SIB),University of Geneva Medical School (author)
  • Laukens, KrisUniversity of Antwerp (author)
  • Levander, FredrikLund University,Lunds universitet,Institutionen för immunteknologi,Institutioner vid LTH,Lunds Tekniska Högskola,Department of Immunotechnology,Departments at LTH,Faculty of Engineering, LTH(Swepub:lu)tmb-fle (author)
  • Lisacek, FrederiqueUniversity of Geneva,Swiss Institute for Bioinformatics (SIB) (author)
  • Novak, PetrAcademy of Sciences of the Czech Republic (author)
  • Palmblad, MagnusLeiden University Medical Centre (author)
  • Piovesan, DamianoUniversity of Padova (author)
  • Pühler, AlfredBielefeld University (author)
  • Schwämmle, VeitUniversity of Southern Denmark (author)
  • Valkenborg, DirkHasselt University,Flemish Institute for Technological Research,University of Antwerp (author)
  • van Rijswijk, MerlijnNetherlands Metabolomics Centre,Dutch Techcentre for Life Sciences (author)
  • Vondrasek, JiriAcademy of Sciences of the Czech Republic (author)
  • Eisenacher, MartinRuhr-University Bochum (author)
  • Martens, LennartGhent University (author)
  • Kohlbacher, OliverMax Planck Institute for Developmental Biology,University of Tübingen (author)
  • European Bioinformatics InstituteELIXIR Hub, UK (creator_code:org_t)

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  • In:F1000Research: F1000 Research Ltd62046-1402

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